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Report for CCDS37599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37599.1 Public Mus musculus 17 H2-Q10 23 108 98 CCDS HistoryNCBI Gene:15007Re-query CCDS DB by CCDS ID:37599.1Re-query CCDS DB by GeneID:15007See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 37599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068291.6 ENSMUSP00000066419.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068291.6Link to Ensembl Protein Viewer:ENSMUSP00000066419.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068291Re-query CCDS DB by Protein ID:ENSMUSP00000066419
Original member Current member EBI ENSMUST00000174525.7 ENSMUSP00000134163.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174525.7Link to Ensembl Protein Viewer:ENSMUSP00000134163.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174525Re-query CCDS DB by Protein ID:ENSMUSP00000134163
Original member Current member NCBI NM_010391.4 NP_034521.1 Accepted alive Link to Nucleotide Sequence:NM_010391.4Link to Protein Sequence:NP_034521.1Re-query CCDS DB by Nucleotide ID:NM_010391Re-query CCDS DB by Protein ID:NP_034521Link to BLAST:NP_034521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034521.1 325 P01898 325 100% 0 0

Chromosomal Locations for CCDS 37599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35470107 35470179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35470376 35470645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35470826 35471101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35473083 35473358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35473486 35473568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGGGGCGATGGCGCCGCGCACGCTGCTCCTGCTGCTGGCGGCTGCCCTGGCCCCGACCCAGACCCAGG
CAGGCTCACACTCCATGAGGTATTTCGAAACCTCCGTTTCCCGGCCGGGCCTTGGGGAGCCCCGGTTCAT
TATTGTCGGTTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGACGCGGAGACTCCGAGGATGGAG
CCGCGGGCGCCTTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGAGAGCCAAGGGCA
ATGAGCAGAGTTTCCATGTGAGCCTGAGGACCCTGCTCGGCTACTACAACCAGAGCGAGAGCGGCTCTCA
CACGATCCAGTGGATGTATGGCTGTAAAGTGGGGTCCGACGGGCGCTTCCTCCGCGGGTACCTGCAATAC
GCATACGACGGCCGCGATTACATTGCCCTGAACGAAGACCTGAAAACGTGGACGGCAGCGGACGTGGCGG
CGATTATCACCCGACGCAAGTGGGAGCAGGCTGGTGCTGCAGAGTATTACAGGGCCTACCTGGAGGCCGA
GTGCGTGGAGTGGCTCCTCAGATACCTGGAGCTCGGGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAG
ACACATGTGACCCATCACCCAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACC
CTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAACTGGTGGAGAC
CAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAAT
TACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGGAACCTCCTCCTTCCA
CTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGA

Translation (325 aa):
MGAMAPRTLLLLLAAALAPTQTQAGSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRME
PRAPWMEQEGPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQY
AYDGRDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRTDPPK
THVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQN
YTCHVYHEGLPEPLTLRWEPPPSTDSIMSHIADLLWPSLKLWWYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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