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Report for CCDS37839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37839.1 Public Mus musculus 18 Ablim3 23 108 98 CCDS HistoryNCBI Gene:319713Re-query CCDS DB by CCDS ID:37839.1Re-query CCDS DB by GeneID:319713See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049378.14 ENSMUSP00000041243.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049378.14Link to Ensembl Protein Viewer:ENSMUSP00000041243.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049378Re-query CCDS DB by Protein ID:ENSMUSP00000041243
Original member Current member EBI ENSMUST00000166783.2 ENSMUSP00000125836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166783.2Link to Ensembl Protein Viewer:ENSMUSP00000125836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166783Re-query CCDS DB by Protein ID:ENSMUSP00000125836
Original member Current member NCBI NM_001164491.1 NP_001157963.1 Accepted alive Link to Nucleotide Sequence:NM_001164491.1Link to Protein Sequence:NP_001157963.1Re-query CCDS DB by Nucleotide ID:NM_001164491Re-query CCDS DB by Protein ID:NP_001157963Link to BLAST:NP_001157963.1
Original member Current member NCBI NM_198649.3 NP_941051.2 Accepted alive Link to Nucleotide Sequence:NM_198649.3Link to Protein Sequence:NP_941051.2Re-query CCDS DB by Nucleotide ID:NM_198649Re-query CCDS DB by Protein ID:NP_941051Link to BLAST:NP_941051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157963.1 682 Q69ZX8 682 100% 0 0
NP_941051.2 682 Q69ZX8 682 100% 0 0

Chromosomal Locations for CCDS 37839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61801295 61801408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61805066 61805146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61805637 61805644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61806387 61806447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61808380 61808438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61808932 61808961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61811311 61811458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61813542 61813606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61814198 61814332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61816922 61816969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61818989 61819087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61819791 61819917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61820367 61820396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61821873 61822028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61823867 61823938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61826501 61826559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61839690 61839777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61845790 61845883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61849298 61849424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61855203 61855315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61857002 61857185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61871566 61871703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61911229 61911241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGAACACGAGCATTCCTTACCAGCAGAGTCCGTACAGTCCCCGGGGCGGCTCCAATGTCATCCAGTGCT
ACCGCTGCGGAGACACCTGCAAAGGGGAGGTGGTCCGTGTCCACAACAACCACTTCCACATCCGATGCTT
CACTTGTCAAGTATGTGGATGTGGCCTGGCCCAGTCGGGCTTCTTCTTCAAGAACCAGGAGTACATCTGC
ACCCAGGACTACCAACAGCTTTATGGCACCCGCTGTGATAGCTGCCGGGACTTCATCACGGGTGAGGTCA
TCTCTGCCCTGGGCCGTACCTACCACCCTAAATGCTTCGTATGCAGCTTGTGCAGGAAGCCTTTCCCTAT
TGGAGATAAGGTGACCTTCAGTGGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTCAATGACCAGCAGC
AAGCCGATCAAGATCCGTGGACCAAGCCACTGTGCTGGGTGCAAAGAGGAGATTAAACATGGCCAGTCAC
TTCTGGCACTGGACAAGCAGTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAGCGTCATCCTCACTGG
GGAATACATTAGCAAAGACGGTGTTCCATACTGCGAGTCTGACTACCACTCCCAGTTTGGCATCAAATGT
GAGACTTGTGACCGGTACATCAGTGGCAGGGTCTTGGAGGCAGGAGGGAAACACTACCACCCTACCTGTG
CCAGATGTGTACGCTGCCACCAGATGTTCACTGAGGGGGAGGAGATGTATCTCACAGGTTCTGAGGTTTG
GCACCCAATCTGCAAGCAGGCAGCCAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACATCTGAAACTTCC
ATCTCACCCCCTGGTTCCAGCATCGGGTCGCCTAACCGAGTCATCTGTGCTAAAGTGGATAATGAGATCC
TTAATTACAAAGACCTGGCAGCTCTCCCCAAGGTTAAGTCCATCTACGAGGTGCAACGCCCCGACCTCAT
TTCCTACGAGCCTCATTCCAGATACACCTCCGACGAGATGCTGGAGAGATGCGGTTATGGAGAGTCACTG
GGAACATTATCTCCTTACTCCCAGGACATCTATGAGAACCTGGACCTCCGGCAGAGGCGGGCCTCCAGCC
CTGGCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTA
CTACCGCTCAGGGCCTGAGAGTGGCCGGAGCTCCCCATACCATAGCCAATTAGATGTGAGGTCCTCCACG
CCAACCTCTTACCAGGCTCCCAAGCACTTTCACATCCCAGCTGGAGAGAGTAACATCTACCGAAAACCCC
CGATCTACAAACGGCATGGTGATTTGTCCACAGCAACCAAGAGCAAAACAAGTGAAGACATCAGCCAGGC
CTCCAAGTATAGCCCAGCCTACTCGCCAGACCCCTACTATGCTTCAGAGTCTGAGTATTGGACCTACCAT
GGGTCCCCCAAAGTGCCCCGAGCCAGAAGGTTCTCATCTGGAGGAGAGGAAGAGGATTTTGACCGAAGCA
TGCACAAGCTCCAGAGTGGGATTGGCCGGCTGATCCTGAAGGAAGAGATGAAGGCGCGGTCAAGCTCCTA
TGCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGCAGTCGGGAGGCCCTGCACACCACTGGCTATGAG
ATGTCCTTCAATGGCTCCCCTCGTTCACACTACCTGGCTGACAGTGATCCCCTCATCTCCAAATCTGCCT
CACTGCCTGCCTACAGGAGAAATGGGCTGCACAGGACACCCAGTGCGGACCTCTTCCACTACGACAGCAT
GAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTATCCTTATGAGCTGCTACTGGTGACCACAAGA
GGAAGGAACCGACTGCCAAAGGATGTGGACCGGACTCGCTTAGAGCGCCACCTGTCCCAGGAGGAGTTCT
ACCAAGTCTTCGGCATGACCATCTCCGAGTTCGAGAGGCTAGCCCTCTGGAAGAGGAACGAACTGAAGAA
GCAAGCCCGGCTTTTCTAG

Translation (682 aa):
MNTSIPYQQSPYSPRGGSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVCGCGLAQSGFFFKNQEYIC
TQDYQQLYGTRCDSCRDFITGEVISALGRTYHPKCFVCSLCRKPFPIGDKVTFSGKECVCQTCSQSMTSS
KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHSQFGIKC
ETCDRYISGRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETS
ISPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEMLERCGYGESL
GTLSPYSQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFSRSPHYYRSGPESGRSSPYHSQLDVRSST
PTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTATKSKTSEDISQASKYSPAYSPDPYYASESEYWTYH
GSPKVPRARRFSSGGEEEDFDRSMHKLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTTGYE
MSFNGSPRSHYLADSDPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREYKIYPYELLLVTTR
GRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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