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Report for CCDS3790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3790.1 Public Homo sapiens 4 RBM46 24 110 108 CCDS HistoryNCBI Gene:166863Re-query CCDS DB by CCDS ID:3790.1Re-query CCDS DB by GeneID:166863See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281722.8 ENSP00000281722.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281722.8Link to Ensembl Protein Viewer:ENSP00000281722.3Re-query CCDS DB by Nucleotide ID:ENST00000281722Re-query CCDS DB by Protein ID:ENSP00000281722
Original member Current member NCBI NM_144979.5 NP_659416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144979.5Link to Protein Sequence:NP_659416.1Re-query CCDS DB by Nucleotide ID:NM_144979Re-query CCDS DB by Protein ID:NP_659416Link to BLAST:NP_659416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659416.1 533 Q8TBY0-1 533 100% 0 0

Chromosomal Locations for CCDS 3790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154796753 154796903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154797811 154798278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154798782 154799564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154827868 154828067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGAATGAAGAAAATATAGATGGAACAAATGGATGCAGTAAAGTTCGAACTGGTATTCAGAATGAAGCAG
CATTACTTGCTTTGATGGAAAAGACTGGTTACAACATGGTTCAGGAAAATGGACAAAGGAAATTTGGCGG
TCCTCCTCCAGGTTGGGAAGGTCCACCTCCACCTAGAGGCTGTGAAGTTTTTGTAGGAAAAATACCTCGT
GATATGTATGAAGATGAGTTAGTTCCTGTATTTGAAAGAGCTGGGAAGATATATGAATTTCGACTTATGA
TGGAATTTAGTGGTGAAAATCGAGGTTATGCTTTTGTGATGTACACTACAAAAGAAGAAGCCCAATTAGC
CATCAGAATTCTTAATAATTATGAAATTCGACCAGGGAAGTTTATTGGTGTGTGTGTAAGCCTGGATAAT
TGTAGATTATTTATTGGAGCTATTCCCAAGGAAAAGAAGAAAGAAGAAATTTTAGATGAAATGAAGAAAG
TTACAGAAGGAGTTGTAGATGTCATTGTTTATCCAAGTGCAACTGATAAGACCAAAAATCGTGGTTTTGC
ATTTGTGGAATATGAATCTCACAGAGCTGCTGCTATGGCAAGGAGGAAACTAATTCCAGGAACATTCCAA
CTATGGGGCCACACCATTCAGGTAGATTGGGCTGACCCAGAGAAAGAGGTGGATGAGGAAACCATGCAGA
GAGTTAAAGTTCTTTATGTAAGAAATTTAATGATCTCAACTACAGAGGAAACAATTAAAGCAGAATTCAA
TAAATTTAAGCCTGGTGCAGTTGAACGGGTAAAGAAACTTAGAGATTATGCTTTTGTTCACTTTTTCAAC
CGAGAAGATGCAGTGGCTGCCATGTCTGTTATGAATGGAAAATGCATTGATGGAGCAAGTATTGAGGTAA
CACTAGCTAAACCAGTAAATAAAGAAAACACTTGGAGACAGCATCTTAATGGTCAGATTAGTCCAAATTC
TGAAAATCTGATTGTGTTTGCTAACAAAGAAGAGAGCCACCCAAAAACTCTAGGCAAGCTGCCAACTCTT
CCTGCTCGTCTCAATGGTCAGCATAGCCCAAGTCCGCCTGAAGTTGAAAGATGCACTTACCCTTTTTATC
CTGGAACAAAGCTTACTCCAATTAGTATGTATTCTTTAAAATCCAATCATTTTAATTCTGCAGTAATGCA
TTTGGATTATTACTGCAACAAAAATAACTGGGCACCACCAGAATATTATTTATATTCAACAACAAGTCAA
GATGGGAAAGTACTCTTGGTGTATAAGATAGTTATTCCTGCTATTGCAAATGGATCCCAGAGTTACTTCA
TGCCAGACAAACTCTGTACTACGTTAGAAGATGCAAAGGAACTGGCAGCCCAGTTTACATTACTTCATTT
GGACTACAATTTCCATCGCAGCTCAATAAATAGTCTTTCCCCTGTTAGTGCTACCCTCTCTTCTGGGACT
CCCAGCGTGCTTCCTTATACTTCAAGGCCTTATTCTTATCCAGGCTATCCTTTGTCACCAACAATATCAC
TTGCTAATGGCAGCCATGTTGGACAGCGGCTATGTATCTCCAATCAGGCCTCCTTCTTCTGA

Translation (533 aa):
MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPR
DMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDN
CRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQ
LWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFN
REDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTL
PARLNGQHSPSPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ
DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFHRSSINSLSPVSATLSSGT
PSVLPYTSRPYSYPGYPLSPTISLANGSHVGQRLCISNQASFF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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