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Report for CCDS37917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37917.1 Public Mus musculus 19 Cd6 23 108 98 CCDS HistoryNCBI Gene:12511Re-query CCDS DB by CCDS ID:37917.1Re-query CCDS DB by GeneID:12511See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080292.11 ENSMUSP00000079172.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080292.11Link to Ensembl Protein Viewer:ENSMUSP00000079172.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080292Re-query CCDS DB by Protein ID:ENSMUSP00000079172
Original member Current member NCBI NM_009852.3 NP_033982.3 Accepted alive Link to Nucleotide Sequence:NM_009852.3Link to Protein Sequence:NP_033982.3Re-query CCDS DB by Nucleotide ID:NM_009852Re-query CCDS DB by Protein ID:NP_033982Link to BLAST:NP_033982.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033982.3 665 Q61003-1 665 100% 0 0

Chromosomal Locations for CCDS 37917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10790173 10790243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10790569 10790670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10790916 10791170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10791382 10791453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10792828 10792944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10794142 10794237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10794564 10794704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10796326 10796388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10797676 10797978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10798316 10798627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10799194 10799541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10800344 10800412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10829808 10829856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGTGGCTCTTCCTTGGGATCGCTGGATTGCTGACAGCAGTTCTCTCAGGTCTCCCATCTCCAGCCCCCT
CT
GGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAGAGGAGCGGCTGGGGATTCGCCT
G
GTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCG
GCA
CACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTA
CC
TACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAA
T
ACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGAC
CAG
GAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAGAGAACCAAGCAGTGCGGTTAGTGG
AT
GGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGA
C
ACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTG
GCC
GGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGG
CT
TACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGT
G
TGCTCAGAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTAC
TTC
CGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGT
CC
TTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTA
C
TCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGC
CAG
TCGCGGGCAGCCAGGGTTGTCTGCTCAGGCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGC
CT
TCCAGAGTTCCAGTCACGATAGAATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCT
G
ACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTT
CTC
TTGAGAGCCAAAGGACAATACGCCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACC
AA
GCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAGCTCCTATGCTGTTCATCCA
G
CCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAG
CCA
CCTGTGGCCCTGACCACCTTCTACAATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGA
AC
AGGTTTCAGATGCCACCCTTGGAGGAAGGACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGA
C
CCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCC
AGC
ACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGT
TT
TATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTT
T
TCAGGGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCA
CCC
CAGCATCCTCCAGCAGAACAGTTTGAATGTCCAGGACCCCCTGGCCCCCAAACAGACTCCATTGATG
AT
GATGAGGAGGATTACGATGACATCGGTGCAGCCTAG


Translation (665 aa):
MWLFLGIAGLLTAVLSGLPSPAPSGQHKNGTIPNMTLDLEERLGIRLVNGSSRCSGSVKVLLESWEPVCA
A
HWNRAATEAVCKALNCGDSGKVTYLMPPTSELPPGATSGNTSSAGNTTWARAPTERCRGANWQFCKVQD
Q
ECSSDRRLVWVTCA
ENQAVRLVDGSSRCAGRVEMLEHGEWGTVCDDTWDLQDAHVVCKQLKCGWAVKAL
A
GLHFTPGQGPIHRDQVNCSGTEAYLWDCPGRPGDQYCGHKEDAGVVCS
EHQSWRLTGGIDSCEGQVEVY
F
RGVWSTVCDSEWYPSEAKVLCRSLGCGSAVARPRGLPHSLDGRMYYSCKGQEPALSTCSWRFNNSNLCS
Q
SRAARVVCS
GSQRHLNLSTSEVPSRVPVTIESSVPVSVKDKDSQGLTLLILCIVLGILLLVSTIFIVIL
L
LRAKGQY
ALPASVNHQQLSTANQAGINNYHPVPITIAKEAPMLFIQPRVPADSDSSSDSDYEHYDFSSQ
P
PVALTTFY
NSQRHRVTEEEAQQNRFQMPPLEEGLEELHVSHIPAADPRPCVADVPSRGSQYHVRNNSDS
S
TSSEEGYCNDPSSKPPPWNSQAFYSEKSPLTEQPPNLELAGSPAVFS
GPSADDSSSTSSGEWYQNFQPP
P
QHPPAEQFECP
GPPGPQTDSIDDDEEDYDDIGAA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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