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Report for CCDS38089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38089.1 Public Mus musculus 2 Ttf1 23 108 98 CCDS HistoryNCBI Gene:22130Re-query CCDS DB by CCDS ID:38089.1Re-query CCDS DB by GeneID:22130See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100237.3 ENSMUSP00000097809.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100237.3Link to Ensembl Protein Viewer:ENSMUSP00000097809.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100237Re-query CCDS DB by Protein ID:ENSMUSP00000097809
Original member Current member NCBI NM_009442.2 NP_033468.2 Accepted alive Link to Nucleotide Sequence:NM_009442.2Link to Protein Sequence:NP_033468.2Re-query CCDS DB by Nucleotide ID:NM_009442Re-query CCDS DB by Protein ID:NP_033468Link to BLAST:NP_033468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033468.2 859 Q62187 859 100% 0 0

Chromosomal Locations for CCDS 38089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29064626 29065908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29067003 29067229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29069892 29070077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29071298 29071376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29073889 29074019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29074574 29074808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29079389 29079478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29081012 29081077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29083533 29083618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29084637 29084814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29086107 29086125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGAAAGGGGGCACAAGCAAATTTAAGACCCACACTGAAACTTTGTACAAGAAAAAGAAATGGTCTTCTG
TGTCTGAAAAAAGACCTCAGAAATGTCCCTCTCAGTGCTTGGAGAGCAAGCAGCCTCAGGTATCTGTGTT
GGGGAAGAGGAGGAGGGCGTCCCAGACACCAGCCCAGGAGACCTTAGAGAGTGAGTGGCCTCAAAAGGCC
AAGAGGAAGAAGAGGAGGAGGGAACCCCAGACACCAGCCCAGGAGACCTTAGAGAGTGAGTGGCCTCAAA
AGGCCAAGAAGAAGAAGAGAAGGGGGGAACCCCAGACACCAACCCAAGAGAGTTTGGAGAGTGAGCAGCC
TCCAGTGTCCTTGCTGGGGAAGAGAAGGAGGGAATCCCAGACACCAGCCCAGGAGAACTCGGAGAGTGAG
CAGCCTCGGAAAGCCAAGAGAAGGAGGAAGAAAAGGAAAGGGTCCCAGCAACCAACTTCCTCCCTTCTGA
AAACTCCAGAAACCTTTCTTAAAGCTAAGAAAACCACTTCTGCCCACAAGAAGAAAAAGAATAGTGTTCT
GGAGGTGGATATGGAAACTGGGATCATCCTTGTAGATAAAGAAAACATGGAGAACCTGCTAGAGACTTCT
AGAAAGGATGTGGATATTGTTTATGTTGATATGAGCAAGGGACAAAGGTCAGCAAAAGTGCGTGAAACAG
GAGAGCTGCCCGCTGCTAAGCCACAGGAACATGGCTGTCGAGAGCTGCTCGGTGACGTCAGGAGCAGAAA
GAAACAAAAGCACCTCCAGAAAGTTGCACCCTGGGATGTTGTTCAGGGGAGCCAGCCTGAGAGTATCTCC
CTGCCCCCATCAGAGCCCTTGTCTTCTGAAGATTTAGAAGGCAAAAGCACAGAAGCAGCAGTGTTTTGTA
AAAAGAAGTCTAAAAAAAACGTGTTCAGGAGCCAGGAATTGGAGCCCATCCCCGACAGTCTTGATGACTC
GGAGACCATCTCTGAGAGACTTGATAGCACACACCATGGAGGAGCTGTCGGGGCTGGAGAAGAATGTGAG
AGCACCAAAGAATCCCACAGTATCAAAAAAAAGTCCAAGAAAAAGAAGCACAAGTCTGTTGCTCTTGCCA
CATCTAGTGACAGTGCCTCAGTGACAGACAGCAAGGCTAAGAATGCCCTGGTGGACTCCTCAGAAGGCAG
TGGTGCTGTGAGGGAAGAGGACGTGGACCACAGGCCAGCAGAGGCAGAAGCCCAGGCTTGTTCCACTGAG
AAGCACAGGGAAGCCATGCAGAGGTTAGAACCTACCCATGAAGAAGAAAGCAATTCGGAATCAGCTAGCA
ATTCTGCAGCAAGACACATATCTGAGGACAGGAGAGAGTCTGATGACTCGGATGTTGATTTGGGCTCTGC
AGTGAGACAGCTGCGAGAGTTCATTCCTGACATACAGGAAAGGGCGGCCACCACCATCAGACGCATGTAT
CGGGATGACCTAGGGCGCTTCAAAGAATTTAAGGCACAAGGTGTGGCTATTAGATTTGGCAAATTTTCTG
CTAAAGAAAATAAACAAATAGAAAAAAATGTGCAAGATTTCCTATCCCTGACTGGAATTGAGAGTGCAGA
CAAGCTGCTGTACACAGACAGATACCCAGAGGAAAAGACTCTGATCACCAACCTAAAACGGAAGCATGCC
TTCAGACTGCACATTGGGAAGGGCATCGCTCGGCCCTGGAAGCTCGTGTACTACCGTGCAAAGAAGATCT
TTGATGTGAATAACTACAAAGGCAGGTACAATGAAGAAGATACTAAGAAGCTGAAGGCATACCATTCCCT
CCATGGAAACGACTGGAAAAAGATTGGGGCCATGGTGGCCCGAAGCAGCCTCTCAGTCGCCCTCAAGTTC
TCTCAGATTGGTGGTACTAGAAACCAAGGTGCTTGGAGTAAGGCAGAAACCCAGAGGCTAATCAAGGCTG
TGGAGGACGTGATCCTAAAGAAGATGTCTCCCCAGGAGTTAAGAGAACTGGATTCTAAACTCCAGGAAGA
CCCTGAGGGTCGCCTGTCAATTGTCCGGGAAAAACTCTACAAGGGCATATCTTGGGTGGAGGTGGAAGCT
AGAGTGGAGACCCGGAACTGGATGCAGTGCAAAAGTAAGTGGACAGAGATTCTTACCAAAAGGATGACCC
ATGGTGGGTTCGTGTATCGTGGGGTCAATGCTCTACAGGCCAAAATCACCCTTATTGAAAGGTTGTATGA
ACTAAATGTGAATGATGCTAATGAAATAGACTGGGAAGATCTTGCTAGCGCCATAGGGGATGTCCCTCCA
CCTTTTGTTCAGGCAAAATTTTATAAGCTGAAAGCTGCCTGCGTTCCCTTTTGGCAGAAAAAGACTTTTC
CAGAAATCATTGACTACTTATATAAGAACAGTCTGCCTTTGCTGAAGGAAAAGTTAGACAAGAAAATGAA
GAAAAAAGACGGCCAGATCCAAACACCTGCAGCTCCCAAACAAGACTTTCTGTTCAAAGACATCTTCCAT
TGCGATGATGACAGTGATGAAGGGAGCCCAGAGGAGCCCAGCGCCTCTGATGTGCAGTGA

Translation (859 aa):
MKGGTSKFKTHTETLYKKKKWSSVSEKRPQKCPSQCLESKQPQVSVLGKRRRASQTPAQETLESEWPQKA
KRKKRRREPQTPAQETLESEWPQKAKKKKRRGEPQTPTQESLESEQPPVSLLGKRRRESQTPAQENSESE
QPRKAKRRRKKRKGSQQPTSSLLKTPETFLKAKKTTSAHKKKKNSVLEVDMETGIILVDKENMENLLETS
RKDVDIVYVDMSKGQRSAKVRETGELPAAKPQEHGCRELLGDVRSRKKQKHLQKVAPWDVVQGSQPESIS
LPPSEPLSSEDLEGKSTEAAVFCKKKSKKNVFRSQELEPIPDSLDDSETISERLDSTHHGGAVGAGEECE
STKESHSIKKKSKKKKHKSVALATSSDSASVTDSKAKNALVDSSEGSGAVREEDVDHRPAEAEAQACSTE
KHREAMQRLEPTHEEESNSESASNSAARHISEDRRESDDSDVDLGSAVRQLREFIPDIQERAATTIRRMY
RDDLGRFKEFKAQGVAIRFGKFSAKENKQIEKNVQDFLSLTGIESADKLLYTDRYPEEKTLITNLKRKHA
FRLHIGKGIARPWKLVYYRAKKIFDVNNYKGRYNEEDTKKLKAYHSLHGNDWKKIGAMVARSSLSVALKF
SQIGGTRNQGAWSKAETQRLIKAVEDVILKKMSPQELRELDSKLQEDPEGRLSIVREKLYKGISWVEVEA
RVETRNWMQCKSKWTEILTKRMTHGGFVYRGVNALQAKITLIERLYELNVNDANEIDWEDLASAIGDVPP
PFVQAKFYKLKAACVPFWQKKTFPEIIDYLYKNSLPLLKEKLDKKMKKKDGQIQTPAAPKQDFLFKDIFH
CDDDSDEGSPEEPSASDVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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