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Report for CCDS38178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38178.1 Public Mus musculus 2 Madd 23 108 98 CCDS HistoryNCBI Gene:228355Re-query CCDS DB by CCDS ID:38178.1Re-query CCDS DB by GeneID:228355See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111370.8 ENSMUSP00000107001.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111370.8Link to Ensembl Protein Viewer:ENSMUSP00000107001.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111370Re-query CCDS DB by Protein ID:ENSMUSP00000107001
Original member Current member NCBI NM_145527.4 NP_663502.3 Accepted alive Link to Nucleotide Sequence:NM_145527.4Link to Protein Sequence:NP_663502.3Re-query CCDS DB by Nucleotide ID:NM_145527Re-query CCDS DB by Protein ID:NP_663502Link to BLAST:NP_663502.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663502.3 1558 Q80U28-3 1558 99.8074% 0 3

Chromosomal Locations for CCDS 38178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91138732 91138755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91142756 91142862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91143015 91143087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91143522 91143686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91146839 91146946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91152454 91152564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91154435 91154540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91154645 91154765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91155013 91155075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91155546 91155648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91157985 91158143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91158405 91158488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91159205 91159305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91160317 91160370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91162028 91162234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91162482 91162632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91162727 91162913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91163499 91163601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91165366 91165467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91166546 91166685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91166914 91167167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91167528 91167718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91167811 91167914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91169701 91169857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91170017 91170252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91170569 91170747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91173113 91173193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91175643 91175756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91176156 91176287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91176806 91177109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91177900 91178496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91179179 91179237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4677 nt):
ATGGTGCAAAAGAAGTTCTGCCCTCGGTTACTTGACTATCTCGTGATCGTAGGGGCGAGGCACCCAAGCA
GT
GACAGTGTGGCTCAGACTCCTGAGCTGCTGCGGAGGTACCCACTAGAGGATCACCCAGAGTTCCCCCT
G
CCCCCAGATGTGGTGTTCTTCTGCCAGCCAGAAGGATGTCTGAGTGTGCGGCAGCGGCGGATGAGCCTT
CGG
GACGATACCTCTTTTGTCTTCACCCTAACCGATAAGGACACCGGAGTCACCCGCTATGGCATCTGTG
TC
AACTTCTACCGTTCCTTCCAAAAGCGAATGCCAAAGGAAAAGGTGGAAGGCGGAGCAGGACCCCGTGG
G
AAGGAAGGCGCTCACACCTCTGGTGCCTCAGAAGAGGCTGCCGCTGGGAGCTCAGAGAGTGGCTCAACC
TTG
CAGCCGCCTAGTGCTGACTCCACTCCTGACGTAAACCAGTCTCCTCGGGGCAAACGTAGGGCAAAAG
CG
GGCAGCCGCTCCCGCAACAGTACCCTGACATCCCTGTGTGTGCTTAGCCACTACCCTTTCTTCTCTAC
C
TTCAGAGAGTGTCTGTATACTCTCAAACGTTTGGTAGACTGCTGTAGTGAACGGCTGCTAGGCAAGAAA
CTG
GGCATCCCTCGAGGTGTACAAAGGGACACCATGTGGCGAATCTTTACTGGATCACTGCTAGTGGAGG
AG
AAGTCCAGTGCCCTTCTGCAAGACCTTCGAGAGATTGAGGCCTGGATCTATCGGTTGCTACGTTCCCC
A
GTGCCTGTCTCTGGGCAGAAGCGAGTGGACATTGAGGTCCTGCCCCAGGAACTCCAGCAGGCCCTGACA
TTT
GCTCTTCCAGATCCATCTCGATTCACCCTAGTAGATTTCCCTCTTCACCTTCCCTTGGAACTTCTGG
GT
GTAGATGCTTGTCTTCAGGTGCTAACCTGCATCCTGTTGGAGCACAAGGTGGTGCTGCAGTCTCGAGA
C
TACAATGCACTCTCCATGTCTGTGATGGCGTTCGTGGCAATGATCTACCCCCTGGAGTACATGTTCCCG
GTC
ATCCCGCTGCTTCCCACCTGCATGGCCTCGGCAGAGCAGCTACTCTTGGCTCCAACCCCATACATCA
TT
GGAGTTCCTGCCAGCTTCTTCCTCTACAAGCTAGATTTCAAAATGCCCGATGACGTGTGGCTAGTGGA
T
CTGGACAGCAATAGGGTGATTGCCCCCACCAATGCAGAAGTGCTACCCATCCTGCCAGAACCAGAATCA
TTA
GAGCTGAAAAAACACTTAAAGCAGGCCTTAGCCAGCATGAGTCTCAACACCCAGCCCATTCTTAACC
TG
GAGAAATTCCACGAGGGCCAGGAGATCCCGCTTCTCTTGGGAAGGCCATCTAATGACCTTCAGTCCAC
A
CCTTCCACTGAATTCAACCCGCTCATTTATGGCAATGATGTAGATTCAGTCGACGTTGCAACGAGAGTG
GCC
ATGGTACGTTTCTTCAACTCTGCTAACGTGCTGCAGGGCTTTCAGATGCACACACGTACCCTGCGAC
TC
TTCCCCCGGCCTGTGGTAGCTTTCCAAGCTGGCTCCTTTCTGGCCTCACGTCCCCGGCAGACTCCCTT
T
GCTGAGAAACTGGCCAGGACCCAAGCTGTGGAGTATTTTGGAGAATGGATCCTGAACCCTTCTAACTAT
GCC
TTCCAGCGGATTCACAACAATACGTTTGATCCGGCCCTTATTGGTGACAAGCCAAAGTGGTACGCTC
AC
CAGCTGCAGCCCATCCATTATCGAGTCTATGATGGCAACTCTCAGCTGGCCGAGGCCCTGAGTGTGCC
C
CCGGAGCGCGATTCTGACTCCGACCCGACGGAGGACAGTGGCAGTGATAGTCAGGATTATGATGACTCA
AGC
TCTTCTTACTCCTCCCTTGGGGACTTTGTCAGTGAAATGATGAAATGTGACATCAATGGAGACACTC
CC
AATGTGGATCCTCTGACCCATGCAGCCCTGGGAGATGCCAGTGAAGTGGAGATTGACGAGCTGCAGCC
C
CAGAAGGAGGGAGAGGAACCCGGCCCAGACAGTGAGAACTCTCAGGAAAACCCTCCGCTGCGCTCCAGC
TCC
AGCACCACGGCCAGCAGCAGCCCCAGCACCGTTGTCCACAGTGCCCACTCTGAAGCTGCTGACTCTA
CA
GAGATGGGAGATAAGGCCACAGCAGGCATCTCCAAGCCCCTCCCTCCCGTGCCTCCCAGCATTTGCAA
A
TCTACTGTGGACAGGAGACAGACAGAGACTGGAGAGGGGTCAGTGTGCCAGCGAACCTATGACAATCCA
TAC
TTCGAGCCCCAGTATGGCTTTCCCCCCGAGGAAGATGAGGAGGAGCAGGGGGAGAGCTACACTCCCC
GG
TTCAGCCAGCATGTCAGTGGCAGTCGGGCTCAAAAGCTGCTGCGGCCCAACAGCTTGAAGCTGGCAAG
T
GACTCAGACGCAGAGTCAGACTCGAGAGCAAGCTCTCCCAACTCCACTGTCTCTAACAACAGCACCGAG
GGC
TTCGGGGGCATCATGTCTTTTGCTAGCAGCCTGTATCGGAACCATAGTACAAGCTTCAGTCTTTCAA
AC
CTCACACTGCCCACCAAAGGTGCCCGCGAGAAGACGACACCATTCCCCAGCCTGAAAGGAAATAGGAG
G
GCCTTAGTGGACCAGAAGTCATCTGTCATTAAACACAGCCCAACCGTGAAAAGAGAACCTTCATCCCCA
CAG
GGCCGGTCGAGCAACTCTAGCGAGAACCAGCAGTTCCTGAAGGAAGTAGTCCATAGTGTGCTGGACG
GC
CAGGGAGTGGGCTGGCTCAATATGAAGAAGGTACGCCGGCTCCTGGAGAGTGAGCAGCTTAGAGTCTT
T
GTACTGAGCAAGCTGAATCGCGCAGTGCAGTCAGAGGATGACGCCCGGCAGGATGTCATCCAAGACGTG
GAG
ATCAGCCGGAAGGTGTACAAGGGGATGCTAGACCTCCTCAAGTGCACAGTCCTCAGCCTCGAGCAGT
CC
TATGCCCACGCAGGTCTGGGTGGTATGGCCAGCATCTTTGGGCTTTTGGAGATTGCCCAGACCCACTA
C
TATAGTAAAGAACCAGACAAACGGAAGAGAAGTCCGACAGAGAATGTAAATACCCCAGTTGGCAAGGAT
CCT
GGTCTGGCTGGGCGGGGGGACCCAAAGGCAATGGCCCAGCTAAGGGTCCCTCAACTGGGCCCTCGGG
CA
CCAAGTGCTACAGGAAAGGGTCCTAAAGAACTGGATACCAGAAGTTTAAAGGAAGAGAATTTTGTAGC
A
TCTGTTGAATTGTGGAACAAGCACCAGGAAGTGAAAAAGCAAAAGGCTTTGGAAAAACAGAGGCCAGAG
GGC
ATCAAGCCTGTCTTTGACCTGGGTGAGACAGAGGAGAAAAAGTCCCAGATGAGCGCAGACAGTGGTG
TG
AGCCTGACATCTGCCTCCCAGAGGACTGATCAAGACTCTGTCATCGGTGTGAGTCCAGCTGTTATGAT
C
CGAAGCTCAAGTCAGGATTCTGAAGTTAGCACCGTGGTGAGTAATAGTTCCGGAGAGACCCTTGGAGCT
GAC
AGTGACCTGAGCAGCAATGCAGGTGACGGGCCAGGAGGCGAAGGCAGCGCCCACCTGGCAAGTTCCC
GG
GCCACTCTGTCCGACAGTGAAATCGAAACCAATTCTGCTACAAGCGCCATCTTTGGTAAAGCCCATAG
C
TTGAAGCCAAAGGAGAAGCCGGCTGGTAGTCCGATTCGCTCTTCCGAAGACGTAAGCCAGCGAGTCTAT
CTC
TATGAGGGACTGCTAGGAAGGGACAAAGGATCCATGTGGGACCAGCTAGAGGATGCCGCTATGGAGA
CC
TTTTCTCTGAGCAAAGAACGTTCTACCTTATGGGACCAAATGCAGTTCTGGGAAGATGCATTCTTAGA
T
GCTGTAATGTTGGAAAGAGAAGGAATGGGTATGGACCAGGGTCCTCAGGAAATGATCGACAGGTACCTC
TCC
CTAGGGGAACACGACCGGAAGCGCCTGGAGGATGATGAAGACCGCTTGCTGGCCACACTTTTACACA
AC
CTCATATCCTATATGCTGCTGATGAAGGTGAACAAGAATGACATCAGGAAGAAAGTACGGCGCCTAAT
G
GGAAAGTCCCACATTGGGCTGGTGTACAGCCAGCAAGTCAATGAGGTGCTCGATCAGCTGAACAGCCTG
AAT
GGACGTGATCTCTCCATCCGGTCCAGCGGCAGCCGGCACATGAAGAAGCAGACTTTTGTTGTGCATG
CA
GGGACGGACACAAATGGAGACATCTTTTTCATGGAAGTGTGTGATGACTGCGTGGTGTTGCGTAGTAA
C
ATTGGGACGGTGTACGAGCGCTGGTGGTATGAGAAGCTCATCAATATGACCTACTGTCCCAAGACCAAG
GTC
CTGTGCTTATGGCGGAGAAATGGCTCTGAGACCCAGCTCAACAAGTTCTATACCAAGAAGTGTCGAG
AG
CTGTACTACTGTGTGAAGGACAGCATGGAACGTGCTGCTGCCCGACAGCAAAGCATCAAACCTGGGCC
T
GAGCTAGGCGGTGAGTTCCCTGTGCAGGACATGAAGACTGGAGAGGGTGGCTTGCTTCAAGTCACCCTG
GAA
GGGATCAATCTCAAGTTCATGCACAACCAGTTCCTGAAATTAAAGAAGTGGTGA


Translation (1558 aa):
MVQKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSL
R
DDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRMPKEKVEGGAGPRGKEGAHTSGASEEAAAGSSESGST
L
QPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKK
L
GIPRGVQ
RDTMWRIFTGSLLVEEKSSALLQDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQQALT
F
ALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHK
VVLQSRDYNALSMSVMAFVAMIYPLEYMFP
V
IPLLPTCMASAEQ
LLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPES
L
ELKKHLKQ
ALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRV
A
MVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPSNY
A
FQRIHN
NTFDPALIGDKPKWYAHQLQPIHYRVYDGNSQLAEALSVPPERDSDSDPTEDSGSDSQDYDDS
S
SSYSSLGDFVSEMMKCDINGDTP
NVDPLTHAALGDASEVEIDELQPQKEGEEPGPDSENSQENPPLRSS
S
STTASSSPSTVVHSAHS
EAADSTEMGDKATAGISKPLPPVPPSICKSTVDRRQTETGEGSVCQRTYDNP
Y
FEPQYGFPPEEDEEEQGESYTPRFSQHVSGS
RAQKLLRPNSLKLASDSDAESDSRASSPNSTVSNNSTE
G
FGGIMSFA
SSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPSSP
Q
GRSSNS
SENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRAVQSEDDARQDVIQDV
E
ISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSK
EPDKRKRSPTENVNTPVGKD
P
GLAGRGDPKAMAQLRVPQLGPRAPSATGKGPKELDTRSLKEENFVASV
ELWNKHQEVKKQKALEKQRPE
G
IKPVFDLGETEEKKSQMSADSGVSLTSASQ
RTDQDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGA
D
SDLSSNAGDGPGGEGSAHLASSRATLSDSEIETNSATSAIF
GKAHSLKPKEKPAGSPIRSSEDVSQRVY
L
YEGLL
GRDKGSMWDQLEDAAMETFSLSKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYL
S
LGEHDRKRLEDDEDRLLATLLHNLISYMLLMK
VNKNDIRKKVRRLMGKSHIGLVYSQQVNEVLDQLNSL
N
GRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFME
VCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTK
V
LCLWRRNGSETQLNKFYTKK
CRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTL
E
GINLKFMHNQ
FLKLKKW



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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