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Report for CCDS38246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38246.1 Public Mus musculus 2 Gpcpd1 23 108 98 CCDS HistoryNCBI Gene:74182Re-query CCDS DB by CCDS ID:38246.1Re-query CCDS DB by GeneID:74182See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060955.11 ENSMUSP00000062221.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060955.11Link to Ensembl Protein Viewer:ENSMUSP00000062221.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060955Re-query CCDS DB by Protein ID:ENSMUSP00000062221
Original member Current member EBI ENSMUST00000110142.7 ENSMUSP00000105769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110142.7Link to Ensembl Protein Viewer:ENSMUSP00000105769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110142Re-query CCDS DB by Protein ID:ENSMUSP00000105769
Original member Current member NCBI NM_001355651.1 NP_001342580.1 Accepted alive Link to Nucleotide Sequence:NM_001355651.1Link to Protein Sequence:NP_001342580.1Re-query CCDS DB by Nucleotide ID:NM_001355651Re-query CCDS DB by Protein ID:NP_001342580Link to BLAST:NP_001342580.1
Original member Current member NCBI NM_028802.3 NP_083078.3 Accepted alive Link to Nucleotide Sequence:NM_028802.3Link to Protein Sequence:NP_083078.3Re-query CCDS DB by Nucleotide ID:NM_028802Re-query CCDS DB by Protein ID:NP_083078Link to BLAST:NP_083078.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342580.1 675 Q8C0L9-1 675 100% 0 0
NP_083078.3 675 Q8C0L9-1 675 100% 0 0

Chromosomal Locations for CCDS 38246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132530553 132530742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132534074 132534234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132534698 132534833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132535362 132535498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132536685 132536750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132538082 132538143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132539899 132539938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132540285 132540362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132542243 132542335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132544392 132544446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132546841 132546973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132547557 132547719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132550314 132550554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132553957 132554080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132556935 132556976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132558607 132558682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132564627 132564711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132568620 132568716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132572185 132572233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGACACCTTCTCAGGTCACTTTTGAAATAAGAGGAACTCTTTTACCAGGAGAGGTCTTTGCAATATGTG
GAAGCTGTGATGCCCTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTATTAATGAAAACGAGACAGG
AGACAGTGTGTTGTGGAAAGCAGTGATTGCTCTCAATAGAGGAGTGTCAGTGAAGTACCGCTACTTCAGA
GGCTGCTTTTTAGAACCAAAGACTATCGGTGGTCCATGTCAAGTCATAGTTCACAAGTGGGAGACTCATC
TACAACCACGATCAATAACCCCTTTAGAAAGTGAAATCATTATTGACGATGGACAGTTTGGCATCCACAA
TGGTGTTGAAACACTGGATTCTGGATGGCTTACATGTCAGACTGAAATAAGATTGCGTCTGCATTTTTCT
GAGAAACCTCCTGTTTCAATTAGCAAGAAAAAGTTCAAAAAATCGAGATTTAGGGTAAAGCTCACACTCG
AGGGTCTGGAGGAAGATGAAGATGATGATGACGATAAGGTCTCTCCCACTGTTCTTCACAAAATGTCCAA
CAGCCTGGAGATATCCTTAATAAGTGACAATGAGTTCAAGTGCAGGCACTCACAGCCAGAATGTGGGTAT
GGCTTACAGCCCGATCGTTGGACAGAGTACAGCATACAGACAATGGAACCAGATAATCTGGAGCTCATCT
TTGACTTTTTTGAGGAAGATCTCAGTGAGCATGTAGTTCAGGGTGATGTTCTTCCTGGACACGTGGGCAC
AGCATGCCTCCTGTCTTCTACCATTGCTGAGAGTGGAAGAAGCGCTGGAATCCTTACTCTTCCCATCATG
AGCAGAAATTCCAGAAAAACTATAGGCAAAGTCAGAGTTGATTTTATCATCATCAAGCCATTACCTGGAT
ATAGTTGTTCTATGCAGTCTTCATTTTCCAAGTATTGGAAACCAAGAATACCATTGGACGTTGGACATCG
TGGTGCAGGGAACTCAACAACGACTGCCAAGCTAGCTAAAGTACAGGAAAATACTATCGCTTCTTTAAGA
AATGCTGCCAGTCATGGCGCAGCATTTGTAGAATTTGATGTCCACCTTTCAAAGGACTTTGTGCCCGTGG
TGTATCATGACCTCACCTGCTGTCTGACCATGAAGAGGAAATATGAAGCTGATCCAGTTGAATTGTTTGA
AATCCCAGTAAAAGAATTAACATTTGACCAACTCCAGTTATTGAAGCTTTCTCATGTGACTGCATTAAAA
ACCAAAGACCGGAAACAATCTTTGTATGAGGAGGAAAATTTCTTTTCTGAAAATCAGCCATTTCCTTCTC
TTAAGATGGTTTTAGAATCATTGCCAGAAAATGTAGGATTTAATATAGAAATAAAATGGATTTGCCAACA
CAGGGATGGAGTATGGGATGGCAACTTATCAACATATTTTGATATGAATGTGTTTTTGGATATAATTTTA
AAAACTGTTTTAGAAAATTCTGGGAAGAGGAGAATAGTGTTTTCTTCTTTTGATGCAGATATTTGTACAA
TGGTTCGGCAGAAGCAGAACAAATATCCCATATTATTTTTGACCCAAGGAAAGTCTGATATTTACCCCGA
ACTCATGGACCTCAGATCTCGGACAACACCCATTGCAATGAGTTTTGCACAGTTTGAAAATATTTTGGGG
ATAAATGCCCATACTGAAGACCTCCTTAGAAACCCATCCTATGTCCAAGAGGCAAAAGCTAAGGGATTGG
TCATATTCTGCTGGGGTGATGATACCAACGATCCTGAAAACAGAAGGAAACTGAAGGAATTTGGAGTAAA
TGGTCTAATATATGATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGGAGCAGTTG
GAGCGCCTGAAGCAAGAATTGCCAGAGCTTAAGAACTGTTTGTGTCCCACTGTTAGCCACTTCATCCCTT
CTTCTTTCTGTGTGGAGCCTGATATCCACGTGGATGCCAACGGCATTGATAGTGTGGAGAACGCTTAG

Translation (675 aa):
MTPSQVTFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALINENETGDSVLWKAVIALNRGVSVKYRYFR
GCFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVETLDSGWLTCQTEIRLRLHFS
EKPPVSISKKKFKKSRFRVKLTLEGLEEDEDDDDDKVSPTVLHKMSNSLEISLISDNEFKCRHSQPECGY
GLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDVLPGHVGTACLLSSTIAESGRSAGILTLPIM
SRNSRKTIGKVRVDFIIIKPLPGYSCSMQSSFSKYWKPRIPLDVGHRGAGNSTTTAKLAKVQENTIASLR
NAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKRKYEADPVELFEIPVKELTFDQLQLLKLSHVTALK
TKDRKQSLYEEENFFSENQPFPSLKMVLESLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNVFLDIIL
KTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILG
INAHTEDLLRNPSYVQEAKAKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQL
ERLKQELPELKNCLCPTVSHFIPSSFCVEPDIHVDANGIDSVENA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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