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Report for CCDS38575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38575.1 Public Mus musculus 3 Syt6 23 108 98 CCDS HistoryNCBI Gene:54524Re-query CCDS DB by CCDS ID:38575.1Re-query CCDS DB by GeneID:54524See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090697.10 ENSMUSP00000088196.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090697.10Link to Ensembl Protein Viewer:ENSMUSP00000088196.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090697Re-query CCDS DB by Protein ID:ENSMUSP00000088196
Original member Current member EBI ENSMUST00000121834.7 ENSMUSP00000112997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121834.7Link to Ensembl Protein Viewer:ENSMUSP00000112997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121834Re-query CCDS DB by Protein ID:ENSMUSP00000112997
Original member NCBI NM_018800.5 NP_061270.2 Updated not alive Link to Nucleotide Sequence:NM_018800.5Link to Protein Sequence:NP_061270.2Re-query CCDS DB by Nucleotide ID:NM_018800Re-query CCDS DB by Protein ID:NP_061270
Current member NCBI NM_018800.6 NP_061270.2 Accepted alive Link to Nucleotide Sequence:NM_018800.6Link to Protein Sequence:NP_061270.2Re-query CCDS DB by Nucleotide ID:NM_018800Re-query CCDS DB by Protein ID:NP_061270Link to BLAST:NP_061270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061270.2 511 Q9R0N8-1 511 100% 0 0

Chromosomal Locations for CCDS 38575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103575378 103575540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103585342 103585690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103587233 103587794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103620786 103620906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103625497 103625668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103626982 103627132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103630902 103630919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGAGCGGGGTTTGGGGGGCCGGAGGGCCTCGGTGCCAGGCGGCGCTCGCGGTCCTGGCTTCTCTGTGCC
GGGCCCGGCCGCCCCCTCTCGGGCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCA
GAGTCCAAGCGCGGCAGACTCAGGCACCTCTGTCAGCCTCCTCGCCGTGGTAGTTATTGTGTGTGGCGTG
GCCCTGGTGGCAGTTTTTCTCTTTCTCTTTTGGAAGCTGTGCTGGATGCCCTGGAGGAAGAAAGAGGCCT
CCAGCCCTTCTTCTGCTAACCCTGCTTCAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGGA
TAAGCTGAAGGACCCCAGTGCCCTGGGCTTCCTGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAGAC
ATCCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACAGACCA
CAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAG
CGTGGACTATGGCAATGAGCTGCCGCCGGCTGCCGCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCT
GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGA
TCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTGACCT
CCCTGCCAAGGACTTTTGCGGAAGTTCTGACCCTTATGTTAAGATCTACCTCCTGCCTGACCGCAAGTGC
AAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCACCTTTGATGAGAACTTCCACTTCCCCGTGC
CCTACGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTGACCGCTTCTCCCGCCATGA
CATGATTGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGG
AAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCTACCTGC
CCACAGCAGGCAGGCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAAAGCAATGGACATCACAGGCTA
CTCAGATCCCTACGTCAAAGTATCCCTACTGTGTGATGGACGGAGGCTGAAAAAGAAGAAAACGACCATA
AAAAAGAACACCCTAAACCCCATCTACAACGAGGCCATCATCTTTGACATCCCCCCAGAAAACATGGACC
AAGTGAGCCTGCTCATCTCCGTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAG
AGTGGGGATCAATGCTGAAGGCCTTGGCAGGGACCACTGGAATGAGATGTTGGCGTACCCACGAAAGCCC
ATTGCGCACTGGCACTCCTTGGTGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTCGGTTGTGA

Translation (511 aa):
MSGVWGAGGPRCQAALAVLASLCRARPPPLGLDVETCRSFELQSPEQSPSAADSGTSVSLLAVVVIVCGV
ALVAVFLFLFWKLCWMPWRKKEASSPSSANPASETLQSPSSRGNMADKLKDPSALGFLEAAVKISHTSPD
IPAEVQMSVKEHIMRHTKLQRQTTEPASSTRHTSFKRHLPRQMHVSSVDYGNELPPAAAEQPTSIGRIKP
ELYKQKSVDGDDAKSEAAKSCGKINFSLRYDYESETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKC
KLQTRVHRKTLNPTFDENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVILDNLFEASDLSRETSIW
KDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTTI
KKNTLNPIYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGVCRVGINAEGLGRDHWNEMLAYPRKP
IAHWHSLVEVKKSFKEGTPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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