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Report for CCDS38630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38630.1 Public Mus musculus 3 Pitx2 23 108 98 CCDS HistoryNCBI Gene:18741Re-query CCDS DB by CCDS ID:38630.1Re-query CCDS DB by GeneID:18741See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106382.10 ENSMUSP00000101990.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106382.10Link to Ensembl Protein Viewer:ENSMUSP00000101990.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000106382Re-query CCDS DB by Protein ID:ENSMUSP00000101990
Original member Current member NCBI NM_001042504.2 NP_001035969.1 Accepted alive Link to Nucleotide Sequence:NM_001042504.2Link to Protein Sequence:NP_001035969.1Re-query CCDS DB by Nucleotide ID:NM_001042504Re-query CCDS DB by Protein ID:NP_001035969Link to BLAST:NP_001035969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035969.1 271 P97474-3 271 100% 0 0

Chromosomal Locations for CCDS 38630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129203947 129203992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129215639 129215844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129218334 129218897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGAGACCAATTGTCGCAAACTAGTGTCGGCCTGCGTGCAATTAGAGAAAGATAAGGGCCAGCAAGGAA
AGAATGAGGATGTGGGCGCCGAGGACCCGTCCAAGAAGAAGCGGCAACGCCGGCAGAGGACTCATTTCAC
TAGCCAGCAGCTGCAGGAGCTGGAAGCCACTTTCCAGAGAAACCGCTACCCAGACATGTCCACTCGCGAA
GAAATCGCCGTGTGGACCAACCTTACGGAAGCCCGAGTCCGGGTTTGGTTCAAGAATCGCCGGGCCAAAT
GGAGAAAGCGGGAACGCAACCAGCAGGCCGAGCTGTGCAAGAATGGCTTTGGGCCGCAGTTCAACGGGCT
CATGCAGCCCTACGATGACATGTACCCCGGCTATTCGTACAACAATTGGGCTGCCAAGGGCCTCACGTCA
GCGTCTCTGTCCACCAAGAGCTTCCCCTTCTTCAACTCCATGAACGTCAATCCCCTGTCCTCTCAGAGTA
TGTTTTCCCCGCCCAACTCCATCTCATCTATGAGTATGTCGTCCAGCATGGTGCCCTCCGCGGTGACCGG
CGTCCCGGGCTCCAGCCTCAATAGCCTGAATAACTTGAACAACCTGAGCAGCCCGTCGCTGAATTCCGCG
GTGCCCACGCCCGCCTGTCCTTACGCGCCGCCGACTCCTCCGTACGTTTATAGGGACACATGTAACTCGA
GCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCGGCTACGCCAGCGTGCAGAACCCGGC
CTCCAACCTGAGTGCTTGCCAGTATGCAGTCGACCGGCCGGTGTGA

Translation (271 aa):
METNCRKLVSACVQLEKDKGQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTRE
EIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTS
ASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSA
VPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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