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Report for CCDS38696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38696.1 Public Mus musculus 4 Lrrc69 23 108 98 CCDS HistoryNCBI Gene:73314Re-query CCDS DB by CCDS ID:38696.1Re-query CCDS DB by GeneID:73314See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023917.7 ENSMUSP00000023917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023917.7Link to Ensembl Protein Viewer:ENSMUSP00000023917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000023917Re-query CCDS DB by Protein ID:ENSMUSP00000023917
Original member Current member EBI ENSMUST00000108276.1 ENSMUSP00000103911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108276.1Link to Ensembl Protein Viewer:ENSMUSP00000103911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108276Re-query CCDS DB by Protein ID:ENSMUSP00000103911
Original member Current member NCBI NM_028499.2 NP_082775.1 Accepted alive Link to Nucleotide Sequence:NM_028499.2Link to Protein Sequence:NP_082775.1Re-query CCDS DB by Nucleotide ID:NM_028499Re-query CCDS DB by Protein ID:NP_082775Link to BLAST:NP_082775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082775.1 347 Q9D9Q0 347 100% 0 0

Chromosomal Locations for CCDS 38696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 14665913 14666023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14703886 14704065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14708590 14708691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14756773 14756844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14769571 14769766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14773672 14773744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14774957 14775083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14795863 14796045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGCTGAAAGATTATTGGTAACAGCACTGAAGGGTGGCAAGAACACTAAGATCCTGACTTTGAATGGCA
AGAGGATTACCAAGATGCCCTCGACACTGGAAAAACTACCTAATCTGAAGACTCTAGACCTTCAAAATAA
TTCCATCTCCAAAGTATGCCCAGAGCTAAGGACCTTGACCCAGTTGACGTTACTAAACCTGGGAAACAAC
CATTTACAAGAAGTTCCTGAAGAGATAAAATATCTTACCTCCCTGAAGAATCTTCATTTATTTGGAAACA
GGATTTGCAGAATTGCTCCTGGAGTTTTTAATGGCCTACATCGCTTGATCATGCTTAATCTGAATGACAA
CAGACTTACGAGTCTTCCTCAAGAAATTGGCAGGTTAAGGAGTCTTACCTACTTAAGCCTCAACCGTAAC
AATCTCACCGTGATTCCCAAAGAGCTTTGTTCCCTTGAGCATCTTTCTGAACTGCATCTAAACTACAATC
AGATCGTGTACATCCCTGAGGAGATCAAGTTCCTGAAGAACCTTCAGCAGCTCTTTCTGGTCAGGAACAA
CATTGAAGAGTTGCCAGAGGAAATTTGTCATCTTGAAAAACTAAGAGTCCTGGACATAGCTGGAAATGTA
ATCCAGATATTTCCGGCAGGCTTTCAGAATCTGAGGCTGACAGAGTTCTACTGTGAGGGAAACCCGCTCT
TCCTGAAGAGGCCATTTTTTGCTGTACAACCTAAAGACCTCTGGACTCTACGGGAAATAGCAGCAAGATT
TGTCCTCTCTCTGTTAGAAGAAAACGACCCTTTGATTATGAATGTCATAGAGAGTTACCCAGAGGTCAAG
GACAAACTCTCCAAAGCAAAAAAGTGTTCAATATGCAGGAAACCTTTTTTAACTGAGTGGCTGGAGTGCG
TTTACTTTGTGGCTCCATCGAAGAACTGGAAGATAAGCAGAAACCTAAAGCTGATTCCTGTCCAGACATC
AGTCTGTTCCTATCAATGCTTTGACCAGCGTGATCCTGATGTCTTTGGAATTGCTCAAGAGTAG

Translation (347 aa):
MAERLLVTALKGGKNTKILTLNGKRITKMPSTLEKLPNLKTLDLQNNSISKVCPELRTLTQLTLLNLGNN
HLQEVPEEIKYLTSLKNLHLFGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQEIGRLRSLTYLSLNRN
NLTVIPKELCSLEHLSELHLNYNQIVYIPEEIKFLKNLQQLFLVRNNIEELPEEICHLEKLRVLDIAGNV
IQIFPAGFQNLRLTEFYCEGNPLFLKRPFFAVQPKDLWTLREIAARFVLSLLEENDPLIMNVIESYPEVK
DKLSKAKKCSICRKPFLTEWLECVYFVAPSKNWKISRNLKLIPVQTSVCSYQCFDQRDPDVFGIAQE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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