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Report for CCDS38870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38870.1 Public Mus musculus 4 Ppt1 23 108 98 CCDS HistoryNCBI Gene:19063Re-query CCDS DB by CCDS ID:38870.1Re-query CCDS DB by GeneID:19063See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030412.10 ENSMUSP00000030412.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030412.10Link to Ensembl Protein Viewer:ENSMUSP00000030412.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030412Re-query CCDS DB by Protein ID:ENSMUSP00000030412
Original member Current member NCBI NM_008917.3 NP_032943.2 Accepted alive Link to Nucleotide Sequence:NM_008917.3Link to Protein Sequence:NP_032943.2Re-query CCDS DB by Nucleotide ID:NM_008917Re-query CCDS DB by Protein ID:NP_032943Link to BLAST:NP_032943.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032943.2 306 O88531 306 100% 0 0

Chromosomal Locations for CCDS 38870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 122836256 122836379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122843995 122844104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122844418 122844545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122845971 122846041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122848433 122848535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122853591 122853681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122854380 122854478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122855806 122855877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122857510 122857632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCGTCGTCCTGTTCGCGGAGGCTGCTAGCTGCCGCTCTGCTGCCTTGGTGCTGCGCCGCCTGGGCCC
TGGGGCATCTGGACCCACCTTCACCACCACCGCTGGTGATCTGGCATGGGATGGGGGACAGCTGTTGTAA
CCCCATGAGCATGGGTGTCATTAAAAAGATGGTTGAAAAAGAAATACCTGGGATTTACGTCCTGTCTCTA
GAGATTGGGAAGAACATGATGGAGGATGTGGAGAACAGCTTCTTCTTGAATGTTAATGTCCAAGTCAACA
TGGTGTGTCAGATTCTGGAAAAGGATCCTAAGTTGCAGCAGGGATACAATGCTATTGGCTTCTCCCAGGG
AGGCCAGTTCCTGAGGGCAGTGGCTCAGAGATGCCCAACACCTCCCATGATGACCCTGATCTCAGTTGGA
GGACAACATCAAGGTGTCTTTGGACTCCCCCGATGCCCAGGAGAGAGTTCTCACATCTGCGACTTCATCA
GGAAGTCACTTAATGCCGGTGCTTACTCCAAACTTGTGCAAGAACGCCTGGTGCAAGCACAGTACTGGCA
TGACCCTATCAAGGAGAGTGTGTACCGAAACTACAGCATCTTCTTGGCAGACATAAATCAAGAGAGGTGT
GTCAATGAGTCCTACAAGAAGAACCTGATGGCCCTCAAGAAGTTTGTGATGGTGAAATTCTTTAATGATT
CCATTGTGGACCCTGTCGACTCTGAGTGGTTTGGATTTTACAGAAGTGGCCAAGCTAAGGAAACCATTCC
CCTCCAGGAGAGCACTCTATACACAGAGGACCGCCTGGGGCTAAAGAAAATGGACAAAGCAGGAAAGCTA
GTGTTTCTGGCTAAGGAAGGGGACCATCTTCAAATATCTAAAGAATGGTTTACTGCCCACATCATACCTT
TTCTTAAGTGA

Translation (306 aa):
MASSCSRRLLAAALLPWCCAAWALGHLDPPSPPPLVIWHGMGDSCCNPMSMGVIKKMVEKEIPGIYVLSL
EIGKNMMEDVENSFFLNVNVQVNMVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCPTPPMMTLISVG
GQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKLVQERLVQAQYWHDPIKESVYRNYSIFLADINQERC
VNESYKKNLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTEDRLGLKKMDKAGKL
VFLAKEGDHLQISKEWFTAHIIPFLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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