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Report for CCDS38925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38925.1 Public Mus musculus 4 Rap1gap 23 108 98 CCDS HistoryNCBI Gene:110351Re-query CCDS DB by CCDS ID:38925.1Re-query CCDS DB by GeneID:110351See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047243.11 ENSMUSP00000042473.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047243.11Link to Ensembl Protein Viewer:ENSMUSP00000042473.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047243Re-query CCDS DB by Protein ID:ENSMUSP00000042473
Original member NCBI NM_001081155.3 NP_001074624.1 Updated not alive Link to Nucleotide Sequence:NM_001081155.3Link to Protein Sequence:NP_001074624.1Re-query CCDS DB by Nucleotide ID:NM_001081155Re-query CCDS DB by Protein ID:NP_001074624
Current member NCBI NM_001081155.4 NP_001074624.1 Accepted alive Link to Nucleotide Sequence:NM_001081155.4Link to Protein Sequence:NP_001074624.1Re-query CCDS DB by Nucleotide ID:NM_001081155Re-query CCDS DB by Protein ID:NP_001074624Link to BLAST:NP_001074624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074624.1 727 A2ALS5-2 727 100% 0 0

Chromosomal Locations for CCDS 38925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137681712 137681755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137683461 137683496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137704074 137704167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137709887 137709922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137710615 137710662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137711648 137711686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137712015 137712200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137715742 137715845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137716085 137716163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137716520 137716573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717398 137717481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717694 137717794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717915 137718044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137718875 137719030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137719328 137719399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137719910 137719996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137720294 137720431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137721826 137721957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137724692 137724801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137725550 137725663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137726952 137727075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137727677 137727779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137728260 137728363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137728528 137728536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGAGCGGCCGGAAGCGCAGCTTCACCTTCGGTGCCTATGGAGGGGTGGACAAATCCTTCTCCCTTCGAC
AGAGTGTGTGGAGGAGTGATGGGCAGAAGCAGAGTTTCCCTCAGGCACTAAACCTGTTACTGGTGGACTC
AGTTCCCTCCCACCCTGCTTCACCCTACCCTAAGAACACAGATCTGTTTGAGATGATTGAAAAGATGCAG
GGAAGCAGGATGGATGAACAGCGATGCTCCTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCT
ACCCAAGTGTCCATGAGGTTTTGGGGCGAGAAGGGCCCTTCCCCCTCATCCTACTGCCCCAGTTTGGGGG
CTACTGGATTGAAGGCACCAACCATGAAATCAGCAGCCTCCCTGAGACAGAGCCGCTGCAGTCTCCCACC
ACCAAGGTCAAGCTGGAGTGCAACCCCACAGCCCGAATCTACCGGAAGCACTTTCTGGGCAAGGAGCACT
TCAATTACTATTCACTGGACACTGCTCTCGGCCACCTGGTATTCTCGCTCAAGTATGATGTCATCGGGGA
TCAGGAGCACCTGCGGCTGTTGCTTAGGACCAAGTGTCGGACCCACCACGATGTCATCCCCATCTCCTGC
CTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGCTGGTATGTGAGGATGTCAATGTGGATCGATTCT
ACCCCGTGCTTTACCCTAAGGCCTCCAGGCTCATTGTCACCTTTGACGAACATGTTATCAGCAATAACTT
CAAGTTTGGAGTCATTTATCAGAAGCTTGGCCAGACCTCTGAGGAAGAACTATTCAGTACCAACGAGGAA
AGTCCTGCCTTCGTGGAATTCCTGGAGTTTCTGGGCCAGAAAGTGAAATTGCAGGATTTCAAGGGGTTCC
GAGGAGGCCTTGACGTGACTCACGGGCAGACGGGGACCGAGTCCGTATACTGCAACTTCCGCAACAAGGA
GATCATGTTTCACGTGTCCACCAAGCTGCCATACACAGAAGGGGACGCTCAGCAGTTGCAGCGGAAGCGG
CATATCGGGAACGACATCGTCGCTGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTG
CATCCAACTTTCTGCATGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAA
GGTCTCTGTCACTGCTAGAGACGATGTGCCCTTTTTTGGGCCTCCCCTCCCGGATCCTGCTGTGTTTAGG
AAGGGGCCTGAGTTCCAGGAATTTCTGCTGACGAAGTTGATCAATGCCGAGTATGCGTGTTACAAAGCAG
AGAAGTTTGCCAAACTGGAGGAGCGGACGCGTGCCGCCCTTCTTGAGACGCTCTACGAGGAGCTCCATAT
TCACAGCCAGTCCATGATGGGCCTCGGCGGCGACGACGACAAGATGGAGAACGGCAGCGGTGGGGGTGGC
TTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGTCAGTCCATGGATGCCATGGGACTGAGCAACA
AGAAACCCAACACCGTGTCAACTAGCCACAGTGGGAGCTTCACCCCCAACAACCCTGACCTGGCCAAGGC
AGCCGGCATATCCCTGATTGTCCCTGGAAAAAGCCCCACAAGGAAGAAGTCTGGTCCGTTTGGCTCACGC
CGCAGCAGTGCCATTGGCATCGAGAACATCCAGGAGGTTCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCC
AGAAGACCCCAGACAGCGGGCATGTCTCACAAGAGCCCAAGTCAGAGAACTCATCCACTCAGAGCTCCCC
AGAGATGCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAGGGCTTCTCC
AGATCTTCCTCCAGCGCCAGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCGTAGACGGGGATGATA
CAGGCCTGGAGAGCGTGTCGTCCTCAGGAACTCCCCATAAGCGGGACTCCTTCCTCTACAGCACATGGCT
GGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAGGCCTCACACGGTCACCCCACCCAGACGTC
GGCAAGTCGGGGGACCCTGCGTGTCCCGAGATCAAGATCCAACTGGAAACATCTGAGCAGCACACACCCC
AGATGGGCTGCTAG

Translation (727 aa):
MSGRKRSFTFGAYGGVDKSFSLRQSVWRSDGQKQSFPQALNLLLVDSVPSHPASPYPKNTDLFEMIEKMQ
GSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEISSLPETEPLQSPT
TKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTHHDVIPISC
LTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEE
SPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKR
HIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFR
KGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGGDDDKMENGSGGGG
FFESFKRVIRSRSQSMDAMGLSNKKPNTVSTSHSGSFTPNNPDLAKAAGISLIVPGKSPTRKKSGPFGSR
RSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRVESAAQRTEVLQGFS
RSSSSASSFTSVVEETEGVDGDDTGLESVSSSGTPHKRDSFLYSTWLDDSVSTTSGGSSPGLTRSPHPDV
GKSGDPACPEIKIQLETSEQHTPQMGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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