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Report for CCDS38980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38980.1 Public Mus musculus 4 Tnfrsf9 23 108 98 CCDS HistoryNCBI Gene:21942Re-query CCDS DB by CCDS ID:38980.1Re-query CCDS DB by GeneID:21942See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060901.10 ENSMUSP00000059684.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060901.10Link to Ensembl Protein Viewer:ENSMUSP00000059684.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060901Re-query CCDS DB by Protein ID:ENSMUSP00000059684
Original member Current member EBI ENSMUST00000105672.9 ENSMUSP00000101297.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105672.9Link to Ensembl Protein Viewer:ENSMUSP00000101297.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105672Re-query CCDS DB by Protein ID:ENSMUSP00000101297
Original member Current member NCBI NM_001077508.1 NP_001070976.1 Accepted alive Link to Nucleotide Sequence:NM_001077508.1Link to Protein Sequence:NP_001070976.1Re-query CCDS DB by Nucleotide ID:NM_001077508Re-query CCDS DB by Protein ID:NP_001070976Link to BLAST:NP_001070976.1

Chromosomal Locations for CCDS 38980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150929846 150929945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150930729 150930833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150932308 150932445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150933033 150933102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150934287 150934411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150944773 150944870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGGAAACAACTGTTACAACGTGGTGGTCATTGTGCTGCTGCTAGTGGGCTGTGAGAAGGTGGGAGCCG
TGCAGAACTCCTGTGATAACTGTCAGCCTGGTACTTTCTGCAGAAAATACAATCCAGTCTGCAAGAGCTG
CCCTCCAAGTACCTTCTCCAGCATAGGTGGACAGCCGAACTGTAACATCTGCAGAGTGTGTGCAGGCTAT
TTCAGGTTCAAGAAGTTTTGCTCCTCTACCCACAACGCGGAGTGTGAGTGCATTGAAGGATTCCATTGCT
TGGGGCCACAGTGCACCAGATGTGAAAAGGACTGCAGGCCTGGCCAGGAGCTAACGAAGCAGGGTTGCAA
AACCTGTAGCTTGGGAACATTTAATGACCAGAACGGTACTGGCGTCTGTCGACCCTGGACGAACTGCTCT
CTAGACGGAAGGTCTGTGCTTAAGACCGGGACCACGGAGAAGGACGTGGTGTGTGGACCCCCTGTGGTGA
GCTTCTCTCCCAGTACCACCATTTCTGTGACTCCAGAGGGAGGACCAGCATTTAAGAAGACCACTGGAGC
AGCTCAAGAGGAAGATGCTTGTAGCTGCCGATGTCCACAGGAAGAAGAAGGAGGAGGAGGAGGCTATGAG
CTGTGA

Translation (211 aa):
MGNNCYNVVVIVLLLVGCEKVGAVQNSCDNCQPGTFCRKYNPVCKSCPPSTFSSIGGQPNCNICRVCAGY
FRFKKFCSSTHNAECECIEGFHCLGPQCTRCEKDCRPGQELTKQGCKTCSLGTFNDQNGTGVCRPWTNCS
LDGRSVLKTGTTEKDVVCGPPVVSFSPSTTISVTPEGGPAFKKTTGAAQEEDACSCRCPQEEEGGGGGYE
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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