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Report for CCDS39021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39021.1 Public Mus musculus 5 Gsap 23 108 98 CCDS HistoryNCBI Gene:212167Re-query CCDS DB by CCDS ID:39021.1Re-query CCDS DB by GeneID:212167See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036031.12 ENSMUSP00000043679.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036031.12Link to Ensembl Protein Viewer:ENSMUSP00000043679.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036031Re-query CCDS DB by Protein ID:ENSMUSP00000043679
Original member NCBI NM_175437.3 NP_780646.2 Updated not alive Link to Nucleotide Sequence:NM_175437.3Link to Protein Sequence:NP_780646.2Re-query CCDS DB by Nucleotide ID:NM_175437Re-query CCDS DB by Protein ID:NP_780646
Current member NCBI NM_175437.4 NP_780646.2 Accepted alive Link to Nucleotide Sequence:NM_175437.4Link to Protein Sequence:NP_780646.2Re-query CCDS DB by Nucleotide ID:NM_175437Re-query CCDS DB by Protein ID:NP_780646Link to BLAST:NP_780646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780646.2 858 Q3TCV3-1 858 100% 0 0

Chromosomal Locations for CCDS 39021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21186363 21186459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21194400 21194476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21196045 21196101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21207241 21207310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21207588 21207641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21217390 21217478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21221226 21221295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21222390 21222439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21226244 21226348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21226774 21226833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21228024 21228067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21229161 21229246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21242805 21242882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21246899 21247000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21250741 21250833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21250939 21251156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21253370 21253439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21253959 21254041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21257870 21257923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21269902 21270030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21270556 21270614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21271217 21271248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21272982 21273043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21278045 21278140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21280996 21281066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21281508 21281602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21287677 21287796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21288588 21288649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21289789 21289890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21290045 21290144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21290538 21290629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGCTCTGCGGCTGGTCACTCACTTCGATGTGCTGGAGGACGTGCTCCCGAGTCTGCTCACACAGGCGG
CGACAACGGACGAAGGAGACAGAGCAGGTGTTTTAGAAACAACTTATGGGAGCTTACGTGTACTAAACAT
CGAAAGAAATGGAAACATTATTTATACCTATAAGGACAATAAGGGAAACGCTGTTTTTGGATTATATGAT
TGCCAAACCAGACAGAATGAGCATCTGTACACCTTTGAGAAGGACATGCAAGCTGTCAGTTGTTCAGTCA
ACAGTGAGAGAACAGTGCTTGCTGCGAGTTTCATTCAGTATACCACAGAGGGAGTAAAGAATGACCTTCA
GCCAGGATCGAAGTGCCTAACTTTGCTGGTAGAAATACACCCTGTTAACAACGTGAAGGTTCTGAAAGCA
GTGGATAGCTGTGTTTGGGTACAGTTCCTCTACCCACAAGCTGAAAGTCATCTTCTTCCACAGAACCACC
TGCTACTGATCTCAGAAGAGAAATATATTGAGCGGTTTCATATCCAGATCACCAGAGAAGATGGAGACAG
AGTGGTGATTAGAAATTCTAGCCATCTCCCAAGAGACAGACTAGCTGAAGACTTTGTTTGGGCTCAGTGG
GATCTGTCAGAGCAGAGACTATACTACATTGAACTAAAGGAGTCAAGGAGTATCTTGAAATGCATCCAGT
TTAGGGCAGATGAAAGTTTTAACTTAATGTTTGAAATGCCCTTGGACATAACGTTAACTGGCTTGAGATT
TAAACTTGTCAACTTTGGATATGACTATCGTCAAGACCGTGAGAAGCTGTGCAATCAGCCTTCTCTCTGC
ATTTTTACCAACCATACAGGGAGTTTGTGTATGTGTTACAGCCCTAAGTCTGACTCACGGGAAGAAATCA
CATATTCAGTGTTCTACCTCCATAAAGGATACAGAAAGATCTTCACTGCAGCTCCTGGAAGTGCTGACTC
ACAGGTCACAAACGGTGCTGACTCACAGGTCACAGACGGCATCGCTTTCCTCAACCTTGGCTACTTTGTG
GCTGTTTACTCCCCTGGCCATTTCCTTCATTTACTTAACATTCAGCATCCAGACTTGGTCTGCCACAGTC
TGTTTCTGACAGGAAACAACAAAATAGCTGCTGTGCTACCTCCAAGTCCTTTGCAGTCCCTGCCGGGGTC
CCTGGTTCTGGACTGCTATTCTGGAAAGGTCTATAGAGTAACCCTTGACCAGTCATACTTGTTGCGGTTC
CTATGGAACGCCCATCTCGACTGTGAGAGAATGGCTGCACTGCACTGTATACTATCCTGTAGTCAAGACC
CAGGTTTCCCGGAAGAACAGATTATCCAGTGGATTTCGGAGCATGTCTCTGCTTGCCATTCATTTGACCT
CATTCAAGAATTTCTAATTGCTTCCTCCTATTGGAGTGTGTATGCAGAGCTGGACGACATGGGCATGCTC
CTACAATACTCCTCTGTGCTGACTTGGAACACAGAAATTCCCGGAATAAAGTTTACGACAGAGGAACTCC
CATTGCCTCTTATGAAGGTCTACGGCTTGAAGGGGTACTGGGCAAAGCTGAACTCCAACCTTGAGTACAT
TAAGTATACAAAACCTCACTTGCACTATCACAACAGCGTCGTGAGGAGGGAATGGCATAACCTGATCTCT
GAAGAGAGAACGGGCAAAAGGAGATCCACAATGTACGTGAGGAACATTCTTGAAAACGCAATGAAGGTGA
TTGCTAGCATGGAAACGAGGACACTGGAGCCAAGATTAATACCATTCTTACAAGAGGAAGACCGGCACCA
GAGGCTGCTCATGGGCTTGATGGTGTCTGAGCTAAGAGACCACCTACTGAGACACCTGCAGGGTGTAGAA
AAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTGCTGGATCTCATTTGGTGCTTGCTGG
AAACCAGTTGGAGGAAACACAGTATGCATCCATTGGTTCTCCACCTCAATAGCCATTGCAGTGCTGCAGA
TTTTGAAGTCTTTCATCTCATGACCAGGATTTTGGATGCTGCTAGCAGTTTGTGTTTGCCTCTGCCTCCT
GGTTTCCACTCTCTGCACACGATCCTTGGGGTCCACTGCCTCCCTTTGTACAGCCTTCTGCACTACATTG
ATAACGGAGTGCTGCTGCTTACTGAGACCGCGGTCACGAGGCTTATGAAAGATCTGGACAATTCAGAGAA
AAATGAACAACTGAAATTCAGCATCATTGTCCGGCTCCCTCCGCTTATTGGCCAGAAGGTCTGCCGGCTT
TGGGACCACCCCATGAGTTCCAATATCATTTCACGGAACCATGTGGCCCGGCTGCTGAAAAACTACAGGA
AAGAGCCTCGGAACTCCATGATTGACAAATCATCATTTCCGGTAGAATTTCTGCCTCTGAACTACTTCAT
CGAAATTCTGATGGGCCTGGAGTCCTCCAACCAAGCACTGTATGGCTTTGAAGGACATGACAATGTGGAC
GCAGAATTTGTAGAGGAAGCTGCTCTGAAACACACCACCATGCTTTTGGGCTTATGA

Translation (858 aa):
MALRLVTHFDVLEDVLPSLLTQAATTDEGDRAGVLETTYGSLRVLNIERNGNIIYTYKDNKGNAVFGLYD
CQTRQNEHLYTFEKDMQAVSCSVNSERTVLAASFIQYTTEGVKNDLQPGSKCLTLLVEIHPVNNVKVLKA
VDSCVWVQFLYPQAESHLLPQNHLLLISEEKYIERFHIQITREDGDRVVIRNSSHLPRDRLAEDFVWAQW
DLSEQRLYYIELKESRSILKCIQFRADESFNLMFEMPLDITLTGLRFKLVNFGYDYRQDREKLCNQPSLC
IFTNHTGSLCMCYSPKSDSREEITYSVFYLHKGYRKIFTAAPGSADSQVTNGADSQVTDGIAFLNLGYFV
AVYSPGHFLHLLNIQHPDLVCHSLFLTGNNKIAAVLPPSPLQSLPGSLVLDCYSGKVYRVTLDQSYLLRF
LWNAHLDCERMAALHCILSCSQDPGFPEEQIIQWISEHVSACHSFDLIQEFLIASSYWSVYAELDDMGML
LQYSSVLTWNTEIPGIKFTTEELPLPLMKVYGLKGYWAKLNSNLEYIKYTKPHLHYHNSVVRREWHNLIS
EERTGKRRSTMYVRNILENAMKVIASMETRTLEPRLIPFLQEEDRHQRLLMGLMVSELRDHLLRHLQGVE
KKKIEQMVLDYISKLLDLIWCLLETSWRKHSMHPLVLHLNSHCSAADFEVFHLMTRILDAASSLCLPLPP
GFHSLHTILGVHCLPLYSLLHYIDNGVLLLTETAVTRLMKDLDNSEKNEQLKFSIIVRLPPLIGQKVCRL
WDHPMSSNIISRNHVARLLKNYRKEPRNSMIDKSSFPVEFLPLNYFIEILMGLESSNQALYGFEGHDNVD
AEFVEEAALKHTTMLLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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