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Report for CCDS39047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39047.1 Public Mus musculus 5 Dpysl5 23 108 98 CCDS HistoryNCBI Gene:65254Re-query CCDS DB by CCDS ID:39047.1Re-query CCDS DB by GeneID:65254See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088081.10 ENSMUSP00000085400.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088081.10Link to Ensembl Protein Viewer:ENSMUSP00000085400.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088081Re-query CCDS DB by Protein ID:ENSMUSP00000085400
Original member Current member EBI ENSMUST00000114729.7 ENSMUSP00000110377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114729.7Link to Ensembl Protein Viewer:ENSMUSP00000110377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114729Re-query CCDS DB by Protein ID:ENSMUSP00000110377
Original member Current member NCBI NM_001356948.1 NP_001343877.1 Accepted alive Link to Nucleotide Sequence:NM_001356948.1Link to Protein Sequence:NP_001343877.1Re-query CCDS DB by Nucleotide ID:NM_001356948Re-query CCDS DB by Protein ID:NP_001343877Link to BLAST:NP_001343877.1
Original member Current member NCBI NM_023047.3 NP_075534.1 Accepted alive Link to Nucleotide Sequence:NM_023047.3Link to Protein Sequence:NP_075534.1Re-query CCDS DB by Nucleotide ID:NM_023047Re-query CCDS DB by Protein ID:NP_075534Link to BLAST:NP_075534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343877.1 564 Q9EQF6 564 100% 0 0
NP_075534.1 564 Q9EQF6 564 100% 0 0

Chromosomal Locations for CCDS 39047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30745226 30745486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30777320 30777478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30777975 30778154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30778868 30778936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30781479 30781523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30783195 30783270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30784311 30784467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30788699 30788840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30791492 30791634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30792120 30792327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30793934 30794102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30796237 30796322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGCTTGCCAATTCAGCCAGCGTGCGGATTCTCATCAAGGGAGGCAAGGTGGTGAACGATGACTGTACCC
ACGAGGCAGACGTCTACATCGAGAGCGGCATCATCCAGCAGGTGGGCCGTGAGCTCATGATCCCCGGTGG
GGCCAAGGTGATTGACGCCACCGGGAAACTGGTGATCCCGGGAGGGATTGACACCAGCACCCACTTCCAC
CAGACCTTCATGAACGCCACCTGTGTGGACGACTTCTACCATGGGACCAAGGCGGCCCTCGTTGGAGGCA
CCACCATGATCATCGGTCACGTCCTGCCAGACAAGGAGACCTCCCTCGTGGAAGCCTATGAGAAGTGCAG
GGCTCTAGCTGACCCCAAGGTCTGCTGTGACTATGCCCTCCATGTGGGGATCACCTGGTGGGCACCCAAG
GTGAAAGCAGAAATGGAGACACTGGTGCGGGAGAAGGGGGTCAACTCCTTCCAGATGTTCATGACCTACA
AGGACTTGTACATGCTTCGAGACAGTGAGCTGTACCAAGTGTTTCATGCCTGCAGGGACATCGGGGCGAT
CCCCCGGGTCCACGCTGAAAATGGAGAGCTCGTGGCTGAGGGTGCTAAGGAGGCTCTAGACTTGGGTATC
ACAGGCCCAGAAGGAATCGAGATCAGCCATCCAGAGGAGCTGGAAGCAGAAGCCACTCACCGTGTCATCA
CCATTGCAAACCGGACTCACTGTCCCATCTACCTGGTCAATGTGTCTAGTATCTCAGCTGGTGATGTCAT
TGCAGCTGCTAAGATGCAAGGGAAGGTGGTGCTAGCCGAGACCACCAACGCACACGCCACGCTCACGGGC
TTGCACTACTACCATCAGGACTGGTCGCATGCAGCCGCCTATGTCACGGTGCCTCCTCTGAGACTGGACA
CCAACACTTCCACCTACCTCATGAGCCTGCTGGCCAATGACACTCTGAACATTGTGGCATCCGATCACCG
GCCATTCACCACAAAGCAGAAAGCCATGGGCAAGGAAGACTTCACTAAGATCCCCCACGGTGTGAGCGGT
GTACAGGATCGAATGAGCGTCGTCTGGGAGAGGGGCGTGGTTGGAGGAAAGATGGATGAGAACCGTTTCG
TGGCCGTCACCAGTTCTAACGCAGCCAAGATCCTCAACCTGTATCCTCGCAAGGGCCGTATCATCCCCGG
AGCCGACGCTGATGTCGTGGTGTGGGACCCGGAAGCCACAAAGACCATCTCAGCCAGCACCCAGGTGCAG
GGTGGAGACTTCAATCTGTATGAGAACATGCGCTGCCACGGTGTACCGCTGGTCACCATCAGCCGGGGAC
GAGTCGTGTATGAGAACGGCGTCTTCATGTGTGCAGAGGGCACTGGCAAGTTCTGTCCCCTGCGGTCTTT
CCCAGACATTGTCTATAAGAAGCTGGTACAGAGAGAGAAGACCTTAAAAGTGAGGGGAGTGGACCGCACT
CCCTACCTAGGGGATGTCGCCATTGTTGTCCACCCTGGGAAAAAAGAGATGGGAACACCATTGGCAGACA
CGCCCACACGGCCAGTCACCCGGCACGGGGGCATGCGGGACCTTCATGAATCCAGTTTCAGCCTCTCTGG
TTCTCAGATCGATGACCACGTTCCAAAGCGGGCCTCAGCTCGGATCCTTGCGCCCCCTGGAGGCAGGTCG
AGCGGTATTTGGTAA

Translation (564 aa):
MLANSASVRILIKGGKVVNDDCTHEADVYIESGIIQQVGRELMIPGGAKVIDATGKLVIPGGIDTSTHFH
QTFMNATCVDDFYHGTKAALVGGTTMIIGHVLPDKETSLVEAYEKCRALADPKVCCDYALHVGITWWAPK
VKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVFHACRDIGAIPRVHAENGELVAEGAKEALDLGI
TGPEGIEISHPEELEAEATHRVITIANRTHCPIYLVNVSSISAGDVIAAAKMQGKVVLAETTNAHATLTG
LHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFTTKQKAMGKEDFTKIPHGVSG
VQDRMSVVWERGVVGGKMDENRFVAVTSSNAAKILNLYPRKGRIIPGADADVVVWDPEATKTISASTQVQ
GGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSFPDIVYKKLVQREKTLKVRGVDRT
PYLGDVAIVVHPGKKEMGTPLADTPTRPVTRHGGMRDLHESSFSLSGSQIDDHVPKRASARILAPPGGRS
SGIW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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