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Report for CCDS39050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39050.1 Public Mus musculus 5 Khk 23 108 98 CCDS HistoryNCBI Gene:16548Re-query CCDS DB by CCDS ID:39050.1Re-query CCDS DB by GeneID:16548See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201621.3 ENSMUSP00000144050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201621.3Link to Ensembl Protein Viewer:ENSMUSP00000144050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201621Re-query CCDS DB by Protein ID:ENSMUSP00000144050
Original member Current member NCBI NM_008439.4 NP_032465.2 Accepted alive Link to Nucleotide Sequence:NM_008439.4Link to Protein Sequence:NP_032465.2Re-query CCDS DB by Nucleotide ID:NM_008439Re-query CCDS DB by Protein ID:NP_032465Link to BLAST:NP_032465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032465.2 298 P97328 298 99.6644% 0 1

Chromosomal Locations for CCDS 39050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30921916 30922007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30924739 30924855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30927022 30927156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30928443 30928515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30929521 30929667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930548 30930636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930716 30930873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30930962 30931047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGAAGAGAAGCAGATCCTGTGCGTGGGGCTGGTGGTGCTGGACATCATCAATGTGGTGGACAAATACC
CA
GAGGAAGACACGGATCGCAGGTGCCTGTCCCAGAGATGGCAGCGTGGAGGCAACGCATCCAACTCCTG
C
ACTGTCCTTTCCTTGCTTGGAGCCCGCTGTGCCTTCATGGGCTCTTTGGCCCCTGGCCACGTTGCCGAC
TTC
CTGGTGGCTGACTTCAGGCAGAGGGGCGTGGATGTGTCTCAAGTGACTTGGCAGAGCCAGGGAGATA
CC
CCTTGCTCTTGCTGCATCGTCAACAACTCCAATGGCTCCCGTACCATTATACTCTACGACACGAACCT
G
CCAGATGTGTCTGCTAAGGACTTTGAGAAGGTCGATCTGACCCGGTTCAAGTGGATCCACATTGAGGGC
CGG
AATGCATCGGAACAGGTGAAGATGCTGCAGCGGATAGAGGAGCACAATGCCAAGCAGCCTCTGCCAC
AG
AAGGTCCGGGTGTCGGTGGAGATAGAGAAGCCCCGTGAGGAGCTCTTCCAGTTGTTTAGCTATGGTGA
G
GTGGTGTTTGTCAGCAAAGATGTGGCCAAGCACCTGGGGTTCCAGTCAGCAGTGGAGGCCCTGAGGGGC
TTG
TACAGTCGAGTGAAGAAAGGGGCTACGCTTGTCTGTGCCTGGGCTGAGGAGGGTGCCGATGCCCTGG
GC
CCCGATGGTCAGCTGCTCCACTCAGATGCCTTCCCACCGCCCCGAGTAGTAGACACTCTTGGGGCTGG
A
GACACCTTCAATGCCTCTGTCATCTTCAGCCTCTCGAAGGGAAACAGCATGCAAGAGGCCCTGAGATTC
GGG
TGCCAGGTGGCTGGCAAGAAGTGTGGCTTGCAGGGGTTTGATGGCATTGTGTGA


Translation (298 aa):
MEEKQILCVGLVVLDIINVVDKYPEEDTDRRCLSQRWQRGGNASNSCTVLSLLGARCAFMGSLAPGHVAD
F
LVADFRQRGVDVSQVTWQSQGDTPCSCCIVNNSNGSRTIILYD
TNLPDVSAKDFEKVDLTRFKWIHIEG
R
NASEQVKMLQRIEEHNAKQPLPQKVRVSVEIEKPREELFQLFSYGEV
VFVSKDVAKHLGFQSAVEALRG
L
YSRVKK
GATLVCAWAEEGADALGPDGQLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSKGNSMQEALRF
G
CQVAGKKCGLQGFDGIV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser