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Report for CCDS39126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39126.1 Public Mus musculus 5 Tmprss11b 23 108 98 CCDS HistoryNCBI Gene:319875Re-query CCDS DB by CCDS ID:39126.1Re-query CCDS DB by GeneID:319875See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038448.6 ENSMUSP00000042406.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038448.6Link to Ensembl Protein Viewer:ENSMUSP00000042406.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038448Re-query CCDS DB by Protein ID:ENSMUSP00000042406
Original member NCBI NM_177024.4 NP_795998.2 Updated not alive Link to Nucleotide Sequence:NM_177024.4Link to Protein Sequence:NP_795998.2Re-query CCDS DB by Nucleotide ID:NM_177024Re-query CCDS DB by Protein ID:NP_795998
Current member NCBI NM_177024.5 NP_795998.2 Accepted alive Link to Nucleotide Sequence:NM_177024.5Link to Protein Sequence:NP_795998.2Re-query CCDS DB by Nucleotide ID:NM_177024Re-query CCDS DB by Protein ID:NP_795998Link to BLAST:NP_795998.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795998.2 416 Q14C59 416 100% 0 0

Chromosomal Locations for CCDS 39126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86660465 86660626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86661543 86661685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86662174 86662433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86663388 86663562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86664276 86664314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86664964 86665124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86667324 86667391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86667485 86667603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86671795 86671910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86676269 86676276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTACAGACCAGTCATAGCATCCCGCAAATCTATCCCACCATGGCTAATCATCCTCTGTGTGCTTGGAG
TGCTGGCAGCCCTTGGGATAATTATTGGACTCTTAGTTCACTTTCTGGCAGTAGAAAACAAGATCTACTA
CTATCAAGGTGGTTTTAAAGTGCTGGATATTCCATATGACAGAAATTATGAAAGGGAGACATCACTAGAA
AGTAACTACCTCAGTAAAATCCTTGAGAATAAAATGGTTGAAGCCTTTCAGAATTCTAACATTTACAAAC
AATATATCAACTCTCAGGTCATCACATTGGTTCCTGATAACAACAGCGTGACAGCACATATATGGCTGGT
GTTTAAGGATCCCTGGTCTAACAAGGAAAACCTAAGAAGGAGAATTGAAAGCATCTTACGTCAGATGCTG
GAGAACAACCCAGAATCCCTGACTACAGATCCTGGGTCTCTGAAGCTCACGGAAATCAGTAAGGTTGATG
CTGAGAAGATTATCAACAACCGCTGTGGGAGAAGACCAAGAATGTCTGCAACCTACGACAGAATCACGGG
AGGTTCCACTGCTCACAAAGGAGAGTGGCCATGGCAAGCGAGTCTCAGAGTGAATGGTAAACACTACTGT
GGGGCATCTCTGATTGGCGAAAGATTTCTGCTCACAGCAGCTCATTGCTTTCAAGGGACAAATAATCCAA
AAAACTTAACTGTCAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTCTGTTCAAGAGATTAT
TATTCATGAAGATTATGTGAAGGGGGAACATCATGATGACGTTGCAGTTATAAAGCTCACTGAAAAAGTT
TCATTCAATAATGATGTGCATCGGGTTTGTCTTCCGGAATCCACCCAGATTTTTCCACCAGGTGAAGGAG
TCGTTGTTACAGGATGGGGATCATTTTCTTACAATGGTAAATCCCCACTGTTACTTCAGAAAGCATCCAT
TAAAATCATTGACACAAATACTTGCAATTCAGAAGAAGCTTATGGAGGCAGGATAGTGGACACAATGCTC
TGTGCTGGCTACTTGGAAGGCAGTATCGATGCTTGCCAGGGTGACTCTGGAGGACCACTAGTTCATCCCA
ATTCTCGAGATATTTGGTACCTTGTTGGGATAGTGAGCTGGGGGCATGAATGTGGCAGAGTCAACAAGCC
AGGGGTCTATATGAGAGTAACTTCCTACCGTAACTGGATTGCCTCCAAGACTGGTATCTAG

Translation (416 aa):
MYRPVIASRKSIPPWLIILCVLGVLAALGIIIGLLVHFLAVENKIYYYQGGFKVLDIPYDRNYERETSLE
SNYLSKILENKMVEAFQNSNIYKQYINSQVITLVPDNNSVTAHIWLVFKDPWSNKENLRRRIESILRQML
ENNPESLTTDPGSLKLTEISKVDAEKIINNRCGRRPRMSATYDRITGGSTAHKGEWPWQASLRVNGKHYC
GASLIGERFLLTAAHCFQGTNNPKNLTVSFGTRVTPAYMQHSVQEIIIHEDYVKGEHHDDVAVIKLTEKV
SFNNDVHRVCLPESTQIFPPGEGVVVTGWGSFSYNGKSPLLLQKASIKIIDTNTCNSEEAYGGRIVDTML
CAGYLEGSIDACQGDSGGPLVHPNSRDIWYLVGIVSWGHECGRVNKPGVYMRVTSYRNWIASKTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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