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Report for CCDS39137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39137.1 Public Mus musculus 5 Smr2 23 108 98 CCDS HistoryNCBI Gene:20600Re-query CCDS DB by CCDS ID:39137.1Re-query CCDS DB by GeneID:20600See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087043.7 ENSMUSP00000084271.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087043.7Link to Ensembl Protein Viewer:ENSMUSP00000084271.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087043Re-query CCDS DB by Protein ID:ENSMUSP00000084271
Original member Current member NCBI NM_021289.2 NP_067264.2 Accepted alive Link to Nucleotide Sequence:NM_021289.2Link to Protein Sequence:NP_067264.2Re-query CCDS DB by Nucleotide ID:NM_021289Re-query CCDS DB by Protein ID:NP_067264Link to BLAST:NP_067264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067264.2 143 O35985-1 143 100% 0 0

Chromosomal Locations for CCDS 39137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88088191 88088244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88108519 88108896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGAAGGCACTGTATATGGTATTTGTCCTCTGGGTTCTTATAGGATGTTTCCTGTCTAGTGAGTGCCAAA
GA
GGCTTCAGAGGACAGCATGATCCTACAAGACCACTATCTCCTTCAAATCCTTCTTCTCATTTTTATCC
T
CAGCCTGATCCCAATCGTGTACAGATTTCTCAACCAGACAATATCCCCATTTTCATGTTTGAACAACCA
CAT
TCTCTTAATATTTGTGTTCCTCCTCCTCCTTTATACCTTGGAGAAGAATTTGAAAAACTACCTCCTA
AT
ACTCATATTCCTTATATACTAATACGTCCAGATATTGAACCTCCAAGCAAATATATTCAACCAGTTCC
C
AGAAAAAAATCAAATGCAACACCAGCTGCCAATAACTTTATAACTACTGCTACTGCCCCCAATTCTACT
GAT
AGCTTTTGA


Translation (143 aa):
MKALYMVFVLWVLIGCFLSSECQRGFRGQHDPTRPLSPSNPSSHFYPQPDPNRVQISQPDNIPIFMFEQP
H
SLNICVPPPPLYLGEEFEKLPPNTHIPYILIRPDIEPPSKYIQPVPRKKSNATPAANNFITTATAPNST
D
SF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser