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Report for CCDS39146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39146.1 Public Mus musculus 5 Parm1 23 108 98 CCDS HistoryNCBI Gene:231440Re-query CCDS DB by CCDS ID:39146.1Re-query CCDS DB by GeneID:231440See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040576.9 ENSMUSP00000042844.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040576.9Link to Ensembl Protein Viewer:ENSMUSP00000042844.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000040576Re-query CCDS DB by Protein ID:ENSMUSP00000042844
Original member Current member NCBI NM_145562.2 NP_663537.1 Accepted alive Link to Nucleotide Sequence:NM_145562.2Link to Protein Sequence:NP_663537.1Re-query CCDS DB by Nucleotide ID:NM_145562Re-query CCDS DB by Protein ID:NP_663537Link to BLAST:NP_663537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663537.1 296 Q923D3 296 100% 0 0

Chromosomal Locations for CCDS 39146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 91517915 91517957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91593818 91594501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91612998 91613076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91622933 91623017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGTCTGCAAGGTGCTCATCGCCCTCTGCATCTTCACCGCAGGACTGAGGGTACAGGGTTCACCAACAG
TCCCATTGCCTGTCTCTCTCATGACAAAAAGTTCAGCACCTGTGGCCACCTGGACTACCTCTGCTCCACA
CACTGCTAGGGCCACCACCCCTGTAGCCAGTGCCACTCACAACGCCTCAGTTCTCCGCACCACTGCCGCA
TCCCTGACATCTCAGCTCCCCACTGACCACAGAGAAGAAGCTGTCACCAGCCCACCTTTGAAGAGGGATG
TCAACAGCACAGACTCCTCACCTGCCGGGTTCCCCTCAACAAGCAGTGATGGCCACTTGGCACCCACACC
TGAGGAACACAGTCTTGGAAGTCCTGAAGCAACTGTGCCAGCTACTGGGTCACAGTCACCCATGCTCCTG
TCTTCTCAGGCTCCAACCTCAGCAACCACATCCCCCGCAACTTCCCTATCGGAGTCTCTCTCTGCCTCCG
TTACCTCTAGCCACAACTCTACGGTGGCCAACATCCAGCCCACAGAAGCTCCAATGGCACCTGCGTCACC
AACAGAAGAGCACAGCTCTAGTCACACACCCACTTCCCATGTCACAGCAGAGCCAGTGCCCAAGGAGAAA
TCACCCCAAGACACTGAACCTGGCAAAGTGATCTGTGAGTCTGAGACCACCACCCCCTTCCTGATCATGC
AAGAAGTGGAGAATGCCTTAAGTTCAGGCAGCATCGCCGCCATCACCGTGACAGTCATCGCCGTAGTGTT
GCTGGTGTTTGGAGGTGCAGCATACCTGAAGATCAGGCACTCCTCCTATGGAAGGCTGCTGGACGACCAT
GACTACGGGTCCTGGGGGAACTACAACAACCCTCTCTACGATGACTCTTAA

Translation (296 aa):
MVCKVLIALCIFTAGLRVQGSPTVPLPVSLMTKSSAPVATWTTSAPHTARATTPVASATHNASVLRTTAA
SLTSQLPTDHREEAVTSPPLKRDVNSTDSSPAGFPSTSSDGHLAPTPEEHSLGSPEATVPATGSQSPMLL
SSQAPTSATTSPATSLSESLSASVTSSHNSTVANIQPTEAPMAPASPTEEHSSSHTPTSHVTAEPVPKEK
SPQDTEPGKVICESETTTPFLIMQEVENALSSGSIAAITVTVIAVVLLVFGGAAYLKIRHSSYGRLLDDH
DYGSWGNYNNPLYDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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