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Report for CCDS39276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39276.1 Public Mus musculus 5 Hip1r 23 108 98 CCDS HistoryNCBI Gene:29816Re-query CCDS DB by CCDS ID:39276.1Re-query CCDS DB by GeneID:29816See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000939.14 ENSMUSP00000000939.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000939.14Link to Ensembl Protein Viewer:ENSMUSP00000000939.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000939Re-query CCDS DB by Protein ID:ENSMUSP00000000939
Original member NCBI NM_145070.3 NP_659507.3 Updated not alive Link to Nucleotide Sequence:NM_145070.3Link to Protein Sequence:NP_659507.3Re-query CCDS DB by Nucleotide ID:NM_145070Re-query CCDS DB by Protein ID:NP_659507
Current member NCBI NM_145070.4 NP_659507.3 Accepted alive Link to Nucleotide Sequence:NM_145070.4Link to Protein Sequence:NP_659507.3Re-query CCDS DB by Nucleotide ID:NM_145070Re-query CCDS DB by Protein ID:NP_659507Link to BLAST:NP_659507.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659507.3 1068 Q9JKY5 1068 100% 0 0

Chromosomal Locations for CCDS 39276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123973763 123973855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123989305 123989368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123989591 123989733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123989937 123989993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123990942 123991022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123991438 123991514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123991744 123991805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123994718 123994858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123995896 123995953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123996039 123996114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123996231 123996371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123996520 123996581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123996771 123996843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123996931 123997114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123997204 123997292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123997364 123997480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123997551 123997652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123997858 123998052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123998786 123998933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123999042 123999128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123999483 123999590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123999771 123999907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124000140 124000250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124000346 124000404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124000602 124000632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124000712 124000774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124000992 124001092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124001206 124001311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124001425 124001548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124001631 124001692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124001788 124001994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124002118 124002165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGAACAGCATCAAGAATGTGCCGGCGCGGGTGCTGAGCCGCAGGCCGGGCCACAGCCTAGAGGCCGAGC
GCGAGCAGTTCGACAAGACGCAGGCCATCAGTATCAGCAAAGCCATCAACAGCCAGGAGGCCCCAGTGAA
GGAGAAGCATGCCCGGCGTATCATCCTGGGCACGCATCATGAGAAGGGAGCCTTTACCTTCTGGTCCTAT
GCCATCGGCCTGCCGCTGTCCAGCAGCTCCATCCTCAGCTGGAAGTTCTGTCACGTCCTTCACAAGGTCC
TCCGGGACGGACACCCCAACGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGA
CTTGTGGGGCCACCTTCGTGACCAGTATGGACACCTGGTGAATATCTATACCAAACTGTTGCTGACTAAG
ATCTCCTTCCACCTTAAGCATCCCCAGTTTCCTGCAGGCCTGGAGGTAACAGATGAGGTGTTGGAGAAGG
CGGCGGGAACTGATGTCAACAACATTTTTCAGCTTACCGTGGAGATGTTTGACTACATGGACTGTGAACT
GAAGCTTTCTGAGTCAGTTTTCCGGCAGCTCAACACGGCCATCGCAGTGTCCCAGATGTCTTCTGGCCAG
TGTCGCCTAGCGCCGCTCATCCAGGTCATTCAGGACTGCAGCCACCTGTACCACTACACAGTGAAGCTCA
TGTTTAAGCTGCACTCCTGTCTCCCGGCAGACACCCTGCAAGGCCACAGGGATCGGTTCCACGAGCAGTT
TCACAGCCTCAAAAACTTCTTCCGCCGAGCTTCAGACATGCTGTACTTCAAGAGGCTCATCCAGATCCCG
CGGCTGCCTGAGGGACCCCCCAATTTCCTGCGGGCTTCAGCCCTGGCTGAGCACATCAAGCCGGTGGTGG
TGATTCCCGAGGAGGCCCCAGAGGAAGAGGAGCCTGAGAACCTAATTGAAATCAGCAGTGCACCCCCTGC
TGGGGAGCCAGTGGTGGTGGCTGACCTCTTTGATCAGACCTTTGGACCCCCCAATGGCTCCATGAAGGAT
GACAGGGACCTCCAAATCGAGAACTTGAAGAGAGAGGTGGAGACCCTCCGTGCTGAGCTGGAGAAGATTA
AGATGGAGGCACAGCGGTACATCTCCCAGCTGAAGGGCCAGGTGAATGGCCTGGAGGCAGAGCTGGAGGA
GCAGCGCAAGCAGAAGCAGAAGGCCCTGGTGGACAACGAGCAGCTGCGCCACGAGCTGGCCCAGCTCAAG
GCCCTGCAGCTGGAGGGCGCCCGCAACCAGGGCCTTCGAGAGGAAGCAGAGAGGAAGGCCAGTGCCACGG
AGGCACGCTACAGCAAGCTGAAGGAGAAACACAGCGAACTCATTAACACCCACGCCGAGCTGCTCAGGAA
GAACGCAGACACGGCCAAGCAGCTGACAGTGACACAGCAGAGCCAGGAGGAGGTGGCACGGGTAAAGGAA
CAGCTGGCCTTCCAGATGGAGCAAGCGAAGCGTGAGTCTGAGATGAAGATGGAAGAGCAGAGCGACCAGT
TGGAGAAGCTCAAGAGGGAGCTGGCGGCCAGGGCAGGAGAGCTGGCCCGTGCGCAGGAGGCCCTGAGCCG
CACAGAACAGAGTGGGTCAGAGCTGAGCTCACGGCTGGACACACTGAATGCGGAGAAGGAAGCTCTGAGT
GGAGTCGTTCGGCAGCGTGAGGCAGAGCTGCTGGCCGCTCAGAGCCTGGTGCGGGAGAAGGAGGAGGCAC
TTAGCCAAGAGCAGCAGCGGAGCTCCCAGGAGAAGGGCGAGCTACGGGGGCAGCTGGCAGAAAAGGAGTC
TCAGGAGCAGGGGCTTCGGCAGAAGCTGCTGGATGAGCAGTTGGCGGTGTTGCGAAGTGCAGCCGCCGAG
GCAGAGGCCATCCTACAGGATGCAGTGAGCAAGCTGGACGACCCCCTGCACCTCCGCTGCACCAGCTCCC
CAGACTACTTGGTGAGCCGGGCTCAGGCAGCCCTGGACAGCGTGAGCGGCCTGGAGCAGGGCCACACCCA
GTACCTGGCTTCCTCTGAAGATGCTTCTGCCCTGGTGGCAGCGCTGACCCGCTTCTCCCATTTGGCTGCG
GACACCATTGTCAATGGTGCCGCCACCTCCCACCTGGCCCCCACCGACCCCGCCGACCGCCTGATGGACA
CATGCAGGGAGTGTGGAGCCCGGGCTCTGGAGCTGGTGGGACAGCTGCAAGACCAGACAGTGCTACCGAG
GGCTCAGCCCAGCCTGATGCGGGCCCCCCTGCAGGGCATTCTGCAGTTGGGCCAGGACTTGAAGCCTAAG
AGCCTGGATGTACGGCAAGAGGAGCTAGGGGCCATGGTGGACAAGGAGATGGCGGCCACCTCGGCAGCCA
TTGAGGACGCTGTGCGGAGGATCGAGGACATGATGAGCCAGGCCCGCCACGAGAGCTCGGGCGTGAAACT
GGAGGTGAATGAGAGGATCCTCAACTCCTGCACAGACCTGATGAAGGCTATCCGGCTCCTGGTGATGACC
TCCACCAGCCTGCAGAAGGAAATTGTGGAGAGCGGCAGGGGGGCAGCAACGCAGCAGGAATTTTATGCCA
AGAATTCACGGTGGACTGAAGGCCTCATCTCAGCCTCTAAGGCAGTGGGCTGGGGAGCCACACAGCTGGT
GGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATACGAGGAACTCATCGTCTGCTCCCATGAGATT
GCGGCCAGCACGGCCCAGCTGGTGGCAGCCTCGAAGGTGAAAGCCAACAAGAACAGTCCCCACTTGAGCC
GCCTGCAGGAATGTTCCCGCACTGTCAACGAGAGGGCTGCCAACGTCGTGGCCTCCACCAAATCTGGCCA
GGAGCAGATTGAGGACAGAGACACCATGGATTTCTCTGGCCTGTCCCTCATCAAGTTGAAGAAGCAGGAG
ATGGAGACACAGGTGCGAGTCTTGGAGCTGGAGAAGACACTAGAGGCAGAGCGTGTCCGGCTCGGGGAGC
TTCGGAAACAGCACTATGTACTGGCTGGGGGGATGGGAACACCTAGCGAAGAAGAACCCAGCAGACCCAG
CCCAGCTCCCCGAAGTGGGGCCACTAAGAAGCCACCGCTGGCCCAGAAACCCAGCATAGCCCCCAGGACA
GACAACCAGCTCGACAAAAAGGATGGTGTCTACCCAGCTCAACTTGTGAACTACTAG

Translation (1068 aa):
MNSIKNVPARVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGAFTFWSY
AIGLPLSSSSILSWKFCHVLHKVLRDGHPNVLHDYQRYRSNIREIGDLWGHLRDQYGHLVNIYTKLLLTK
ISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKLSESVFRQLNTAIAVSQMSSGQ
CRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGHRDRFHEQFHSLKNFFRRASDMLYFKRLIQIP
RLPEGPPNFLRASALAEHIKPVVVIPEEAPEEEEPENLIEISSAPPAGEPVVVADLFDQTFGPPNGSMKD
DRDLQIENLKREVETLRAELEKIKMEAQRYISQLKGQVNGLEAELEEQRKQKQKALVDNEQLRHELAQLK
ALQLEGARNQGLREEAERKASATEARYSKLKEKHSELINTHAELLRKNADTAKQLTVTQQSQEEVARVKE
QLAFQMEQAKRESEMKMEEQSDQLEKLKRELAARAGELARAQEALSRTEQSGSELSSRLDTLNAEKEALS
GVVRQREAELLAAQSLVREKEEALSQEQQRSSQEKGELRGQLAEKESQEQGLRQKLLDEQLAVLRSAAAE
AEAILQDAVSKLDDPLHLRCTSSPDYLVSRAQAALDSVSGLEQGHTQYLASSEDASALVAALTRFSHLAA
DTIVNGAATSHLAPTDPADRLMDTCRECGARALELVGQLQDQTVLPRAQPSLMRAPLQGILQLGQDLKPK
SLDVRQEELGAMVDKEMAATSAAIEDAVRRIEDMMSQARHESSGVKLEVNERILNSCTDLMKAIRLLVMT
STSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVESADKVVLHMGKYEELIVCSHEI
AASTAQLVAASKVKANKNSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGLSLIKLKKQE
METQVRVLELEKTLEAERVRLGELRKQHYVLAGGMGTPSEEEPSRPSPAPRSGATKKPPLAQKPSIAPRT
DNQLDKKDGVYPAQLVNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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