NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39407.1 Public Mus musculus 5 Alox5ap 23 108 98 CCDS HistoryNCBI Gene:11690Re-query CCDS DB by CCDS ID:39407.1Re-query CCDS DB by GeneID:11690See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071130.4 ENSMUSP00000071130.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071130.4Link to Ensembl Protein Viewer:ENSMUSP00000071130.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071130Re-query CCDS DB by Protein ID:ENSMUSP00000071130
Original member Current member NCBI NM_009663.2 NP_033793.1 Accepted alive Link to Nucleotide Sequence:NM_009663.2Link to Protein Sequence:NP_033793.1Re-query CCDS DB by Nucleotide ID:NM_009663Re-query CCDS DB by Protein ID:NP_033793Link to BLAST:NP_033793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033793.1 161 P30355 161 100% 0 0

Chromosomal Locations for CCDS 39407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149265113 149265182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149272381 149272480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149279176 149279246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149285344 149285425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149287572 149287734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGATCAAGAGGCTGTGGGCAACGTTGTGCTCCTGGCCCTTGTCACCCTCATCAGCGTGGTCCAGAATG
CGTTCTTTGCCCACAAGGTGGAGCATGAAAGCAAGGCGCATAATGGGAGAAGCTTCCAGAGGACCGGGAC
TCTTGCCTTTGAGCGGGTCTACACTGCCAACCAGAACTGCGTAGATGCGTACCCCACTTTCCTTGTGGTA
CTCTGGACTGCAGGACTACTTTGCAGCCAAGTCCCTGCCGCCTTCGCCGGACTGATGTACCTGTTTGTGA
GGCAAAAATACTTTGTCGGCTATCTGGGAGAGAGAACTCAGAGCACCCCTGGCTACATCTTCGGCAAGCG
GATCATCCTGTTCCTGTTCCTCATGTCCTTCGCCGGGATACTCAACCATTACCTCATCTTCTTCTTCGGA
AGCGACTTTGAGAACTACATCAGAACGGTAAGCACGACGATCTCCCCGCTGCTTCTCATCCCCTGA

Translation (161 aa):
MDQEAVGNVVLLALVTLISVVQNAFFAHKVEHESKAHNGRSFQRTGTLAFERVYTANQNCVDAYPTFLVV
LWTAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIILFLFLMSFAGILNHYLIFFFG
SDFENYIRTVSTTISPLLLIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH