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Report for CCDS39481.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39481.2 Public Mus musculus 6 Gimap4 23 108 98 CCDS HistoryNCBI Gene:107526Re-query CCDS DB by CCDS ID:39481.2Re-query CCDS DB by GeneID:107526See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39481.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and homology data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39481.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121957.7 ENSMUSP00000113016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121957.7Link to Ensembl Protein Viewer:ENSMUSP00000113016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121957Re-query CCDS DB by Protein ID:ENSMUSP00000113016
Original member Current member NCBI NM_175048.3 NP_778213.2 Accepted alive Link to Nucleotide Sequence:NM_175048.3Link to Protein Sequence:NP_778213.2Re-query CCDS DB by Nucleotide ID:NM_175048Re-query CCDS DB by Protein ID:NP_778213Link to BLAST:NP_778213.2

Chromosomal Locations for CCDS 39481.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48686852 48686909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48690371 48690457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48690842 48690948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48691412 48691429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGGAAGTCCAGTGCGGTGGTGCGGGGTTCATCCCAGAAAGTTCAAGGAGCAGCCATGAGCTTGGAAACC
AAGATCAAGGAATTCCCCAACTGAGAATTGTCTTACTTGGAAAAACTGGAGCAGGAAAGAGTTCAACAGG
GAACAAGGTGATGCATGAGTTCCAGAATCGCTACTGTTTGTTCAACAACAGAGCCTCAGGCGCTGAAAAG
GAAGAGCAGAAGATGCAATTGTTGACCTTGGTCCAGAGCATGGATGAAGTAATGAAGTAA

Translation (89 aa):
MEVQCGGAGFIPESSRSSHELGNQDQGIPQLRIVLLGKTGAGKSSTGNKVMHEFQNRYCLFNNRASGAEK
EEQKMQLLTLVQSMDEVMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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