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Report for CCDS39506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39506.1 Public Mus musculus 6 Cd8b1 23 108 98 CCDS HistoryNCBI Gene:12526Re-query CCDS DB by CCDS ID:39506.1Re-query CCDS DB by GeneID:12526See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065248.8 ENSMUSP00000070131.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065248.8Link to Ensembl Protein Viewer:ENSMUSP00000070131.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065248Re-query CCDS DB by Protein ID:ENSMUSP00000070131
Original member Current member NCBI NM_009858.3 NP_033988.1 Accepted alive Link to Nucleotide Sequence:NM_009858.3Link to Protein Sequence:NP_033988.1Re-query CCDS DB by Nucleotide ID:NM_009858Re-query CCDS DB by Protein ID:NP_033988Link to BLAST:NP_033988.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033988.1 213 P10300 213 100% 0 0

Chromosomal Locations for CCDS 39506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71322857 71322899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71325986 71326348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71329697 71329792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71332436 71332525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71334090 71334126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71336710 71336722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGCAGCCATGGCTCTGGCTGGTCTTCAGTATGAAGCTGGCAGCTCTCTGGAGCAGCTCTGCCCTCATTC
AG
ACCCCTTCGTCCCTGCTGGTTCAAACCAACCATACGGCAAAGATGTCCTGTGAGGTTAAAAGCATCTC
T
AAGTTAACAAGCATCTACTGGCTGCGGGAGCGCCAGGACCCCAAGGACAAGTACTTTGAGTTCCTGGCC
TCC
TGGAGTTCTTCCAAAGGAGTTTTGTATGGTGAAAGTGTGGACAAGAAAAGAAATATAATTCTTGAGT
CT
TCAGACTCAAGACGGCCCTTTCTCAGTATCATGAATGTGAAGCCAGAGGACAGTGACTTCTACTTCTG
C
GCGACGGTTGGGAGCCCCAAGATGGTCTTTGGGACAGGGACGAAGCTGACTGTGGTTGATGTCCTTCCT
ACA
ACTGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAG
AG
ACCCAGAAGGGCCTGACATGCAGCCTTACCACCCTCAGCCTGCTGGTAGTCTGCATCCTGCTTCTGCT
G
GCATTCCTCGGAGTGGCCGTCTACTTTTACTGTGTGCGGAGGAGAGCCCGAATTCACTTCATGAAACAG
TTT
CACAAATGA


Translation (213 aa):
MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLA
S
WSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTV
VDVLP
T
TAPTKKTTLKMKKKKQCPFPHPETQK
GLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQ
F
HK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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