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Report for CCDS39641.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39641.2 Under review, update Mus musculus 6 Scnn1a 23 108 98 CCDS HistoryNCBI Gene:20276Re-query CCDS DB by CCDS ID:39641.2Re-query CCDS DB by GeneID:20276See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39641.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 1 aa longer.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39641.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081440.13 ENSMUSP00000080164.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081440.13Link to Ensembl Protein Viewer:ENSMUSP00000080164.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000081440Re-query CCDS DB by Protein ID:ENSMUSP00000080164
Original member NCBI NM_011324.2 NP_035454.2 Updated not alive Link to Nucleotide Sequence:NM_011324.2Link to Protein Sequence:NP_035454.2Re-query CCDS DB by Nucleotide ID:NM_011324Re-query CCDS DB by Protein ID:NP_035454
Current member NCBI NM_011324.3 NP_035454.3 Pending alive Link to Nucleotide Sequence:NM_011324.3Link to Protein Sequence:NP_035454.3Re-query CCDS DB by Nucleotide ID:NM_011324Re-query CCDS DB by Protein ID:NP_035454Link to BLAST:NP_035454.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035454.3 699 Q61180 699 100% 0 0

Chromosomal Locations for CCDS 39641.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125321881 125322374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125330911 125331184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125332093 125332283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125337797 125337900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125338236 125338399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125338837 125338935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125339106 125339223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125342602 125342680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125342788 125342845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125343021 125343076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125343222 125343297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125343699 125344088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGATGCTGGACCACACCAGAGCCCCTGAGCTCAACCTTGACCTAGACCTTGACGTCTCCAACTCACCGA
AGGGATCCATGAAGGGCAACAATTTCAAGGAGCAAGACCTTTGTCCTCCTCTGCCCATGCAAGGACTGGG
CAAGGGGGACAAGCGTGAAGAACAGGCGCTGGGCCCGGAACCCTCAGAGCCCCGGCAGCCCACCGAGGAG
GAGGAGGCACTGATCGAGTTCCACCGCTCCTACCGGGAGCTCTTCCAGTTCTTCTGCAACAATACCACCA
TCCACGGTGCCATCCGCCTGGTGTGCTCCAAGCACAACCGCATGAAGACGGCCTTCTGGGCGGTGCTCTG
GCTCTGCACCTTCGGCATGATGTACTGGCAGTTTGCTTTGCTGTTCGAGGAATACTTCAGCTACCCCGTG
AGTCTCAACATCAACCTCAATTCGGACAAGCTGGTCTTCCCTGCCGTCACTGTGTGCACCCTTAATCCTT
ACAGATACACTGAAATTAAAGAGGATCTGGAAGAGCTGGACCGCATCACGGAACAGACGCTTTTTGACCT
GTACAAATACAACTCTTCCTACACTCGCCAGGCTGGGGGCCGCCGCCGCAGCACCCGCGACCTCCGGGGT
GCTCTCCCACACCCCCTGCAGCGCCTGCGCACACCACCTCCGCCCAATCCCGCCCGCTCGGCGCGCAGCG
CGTCCTCCAGTGTACGCGACAACAATCCCCAAGTGGACAGGAAGGACTGGAAAATCGGCTTCCAACTGTG
CAACCAGAACAAATCAGACTGCTTCTACCAGACATACTCATCCGGGGTGGATGCCGTGAGAGAATGGTAC
CGCTTCCATTACATCAACATTCTGTCCAGACTGCCCGACACCTCGCCTGCTCTAGAGGAAGAAGCCCTGG
GCAGCTTCATCTTTACCTGTCGTTTCAACCAGGCCCCCTGCAATCAGGCGAATTATTCTCAGTTCCACCA
CCCCATGTATGGGAACTGCTACACTTTCAACAACAAGAACAACTCCAATCTCTGGATGTCTTCCATGCCT
GGAGTCAACAATGGTTTGTCCCTGACACTGCGCACAGAGCAGAATGACTTCATCCCCCTGCTGTCCACAG
TGACGGGGGCCAGGGTGATGGTGCACGGTCAGGATGAGCCTGCTTTTATGGATGATGGTGGCTTCAACGT
GAGGCCTGGTGTGGAGACCTCCATCAGTATGAGAAAGGAAGCCCTGGACAGCCTCGGAGGCAACTACGGA
GACTGCACTGAGAATGGCAGTGATGTCCCTGTCAAGAACCTTTACCCCTCCAAGTACACACAGCAGGTGT
GCATTCACTCCTGCTTCCAGGAGAACATGATCAAGAAGTGTGGCTGTGCCTACATCTTCTACCCTAAGCC
CAAGGGTGTAGAGTTCTGTGACTACCTAAAGCAGAGCTCCTGGGGCTACTGCTACTATAAACTGCAGGCT
GCCTTCTCCTTGGATAGCCTGGGCTGCTTCTCCAAGTGCAGGAAGCCGTGCAGTGTGACCAACTACAAGC
TCTCTGCTGGCTACTCAAGATGGCCGTCTGTGAAGTCCCAGGATTGGATCTTCGAGATGCTATCCTTGCA
GAATAATTACACGATCAACAACAAAAGAAACGGAGTTGCTAAACTCAACATCTTCTTCAAAGAGCTGAAC
TATAAAACTAATTCGGAGTCTCCCTCTGTCACGATGGTCAGCCTCCTGTCCAACCTGGGCAGCCAGTGGA
GCCTGTGGTTCGGCTCATCTGTGCTGTCCGTGGTGGAAATGGCGGAGCTCATCTTCGACCTCCTGGTCAT
CACACTCATCATGTTACTGCACAGGTTCCGGAGCCGGTACTGGTCTCCAGGACGAGGGGCCAGGGGTGCC
AGGGAGGTGGCCTCTACCCCAGCTTCCTCCTTCCCTTCCCGTTTCTGTCCCCACCCTACATCCCCGCCAC
CTTCTTTGCCCCAGCAGGGCACGACCCCTCCCCTGGCCCTGACAGCCCCTCCACCTGCCTATGCTACCCT
AGGCCCCTCTGCCTCTCCACTGGACTCGGCTGTGCCTGGCTCTTCTGCCTGTGCTCCGGCCATGGCACTC
TGA

Translation (700 aa):
MMLDHTRAPELNLDLDLDVSNSPKGSMKGNNFKEQDLCPPLPMQGLGKGDKREEQALGPEPSEPRQPTEE
EEALIEFHRSYRELFQFFCNNTTIHGAIRLVCSKHNRMKTAFWAVLWLCTFGMMYWQFALLFEEYFSYPV
SLNINLNSDKLVFPAVTVCTLNPYRYTEIKEDLEELDRITEQTLFDLYKYNSSYTRQAGGRRRSTRDLRG
ALPHPLQRLRTPPPPNPARSARSASSSVRDNNPQVDRKDWKIGFQLCNQNKSDCFYQTYSSGVDAVREWY
RFHYINILSRLPDTSPALEEEALGSFIFTCRFNQAPCNQANYSQFHHPMYGNCYTFNNKNNSNLWMSSMP
GVNNGLSLTLRTEQNDFIPLLSTVTGARVMVHGQDEPAFMDDGGFNVRPGVETSISMRKEALDSLGGNYG
DCTENGSDVPVKNLYPSKYTQQVCIHSCFQENMIKKCGCAYIFYPKPKGVEFCDYLKQSSWGYCYYKLQA
AFSLDSLGCFSKCRKPCSVTNYKLSAGYSRWPSVKSQDWIFEMLSLQNNYTINNKRNGVAKLNIFFKELN
YKTNSESPSVTMVSLLSNLGSQWSLWFGSSVLSVVEMAELIFDLLVITLIMLLHRFRSRYWSPGRGARGA
REVASTPASSFPSRFCPHPTSPPPSLPQQGTTPPLALTAPPPAYATLGPSASPLDSAVPGSSACAPAMAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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