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Report for CCDS40328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40328.1 Public Mus musculus 8 Mtus1 23 108 98 CCDS HistoryNCBI Gene:102103Re-query CCDS DB by CCDS ID:40328.1Re-query CCDS DB by GeneID:102103See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059115.12 ENSMUSP00000059503.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059115.12Link to Ensembl Protein Viewer:ENSMUSP00000059503.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059115Re-query CCDS DB by Protein ID:ENSMUSP00000059503
Original member Current member EBI ENSMUST00000118835.7 ENSMUSP00000112626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118835.7Link to Ensembl Protein Viewer:ENSMUSP00000112626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118835Re-query CCDS DB by Protein ID:ENSMUSP00000112626
Original member Current member NCBI NM_001005863.2 NP_001005863.1 Accepted alive Link to Nucleotide Sequence:NM_001005863.2Link to Protein Sequence:NP_001005863.1Re-query CCDS DB by Nucleotide ID:NM_001005863Re-query CCDS DB by Protein ID:NP_001005863Link to BLAST:NP_001005863.1
Original member NCBI NM_001286413.1 NP_001273342.1 Updated not alive Link to Nucleotide Sequence:NM_001286413.1Link to Protein Sequence:NP_001273342.1Re-query CCDS DB by Nucleotide ID:NM_001286413Re-query CCDS DB by Protein ID:NP_001273342
Current member NCBI NM_001286413.2 NP_001273342.1 Accepted alive Link to Nucleotide Sequence:NM_001286413.2Link to Protein Sequence:NP_001273342.1Re-query CCDS DB by Nucleotide ID:NM_001286413Re-query CCDS DB by Protein ID:NP_001273342Link to BLAST:NP_001273342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005863.1 1210 Q5HZI1-1 1210 99.9174% 0 1
NP_001273342.1 1210 Q5HZI1-1 1210 99.9174% 0 1

Chromosomal Locations for CCDS 40328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40993420 40993633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40994548 40994645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40998347 40998463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40999436 40999531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40999643 40999716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41000761 41000866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41002305 41002519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41015388 41015454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41022380 41022594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41048048 41048086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41049985 41050116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41076232 41076427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41082614 41084677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3633 nt):
ATGAATGATGATAATTCAGATAGGACAGAAGATGGATCGCGTTATGTATTTATCCGAGATAAAAACTCGA
ATCCATCTGAATACTACCAAACATCGCTATCTGCCCAGTGCCCTTCAGTGAGTCACGGGGATTGGAACTC
TGACAACCCAGATGCCATGGTGGTCGATTATGAAATGGATCCTGCGGTGGACAGTAGTGAAAGTGTATCT
TTAAGCCATCAGTGTGTTGAAGAACTTGCTTACCCAGAGCCTTCAAGTGATTTCATGGGGAAGCATGAGT
TTACAATGTACAGTGAGCTTACCTGCCAGTCTCCTGCACTTGTGAACACAGGGAAGCCCCAAGACCTGCA
CAGTAACTGTGACTCCCTAGAGGCAATCCAGGATGAGAAGTTTGATCCCCTTAAGCCCTGTGAGTGCAGG
TCTGATGACGATTATGCTTGTGGAGATTCCCCTGAAGTTTTGGAGCTAAAACAAACATATGGCATGAAAG
TGGACACGGCTAACTACACCTTTATAGCACGCCATGATATTGAACAGGGTCAGCCTTTGCATGCTCCTGG
AGGTTTGCAGACAACAGTGAGAGACAGAAATGCTTTGTCCTCCTGCGGTCGGACACCACCCCATTCCTCT
AAGATGTATGTGAGAGGGGTTAATTATAATCGAGAGAACTTTGAAAACCTCCAAGCCACACCATCCAAGA
CCCTAAACACAACCTTTACAGTGATCTCTGATGTGCTGATGCAAACTGACAGTCCAGACGTTGGAGTTCA
GGGTCAGAATTCTTTAGGAAATGTCACCAAAGAGTACACAGATGGGACAAGGCGAGGACTCATTGGAGAA
AAAGAGATACAAGCTGTGACACTGGTTTCGGATGGCATGGAGGTCCCCAACGGATCTGCATCACAGGAGT
TCTATTGTGTATCTGAAGATGACCCAAACAGTGAGACACATTCACACGGCCCGTATGCTCAACAGGAAAT
GGGCCAAAATTTAAGAGGAACACTGCCCAACTGTCATGTCGATGGTGAATGCCCAGTACTGGTGCCAGCT
TTTGAGAAGAGTAAAACCAGAGTCCTGGGCTCTGAGTGTAAAGTCACTGTGACTGAAGACCCACACATCG
ATTCCCACGACAATGACTCAGACATCCAAAGTAGTACTGAAGAGCTGACCCTGAGAAGTGTTTCAGGGCA
GAGGGGTTCACCTTATGAAATGGGTTGGGGCGAGAACGGCGGAGCCATTTGCACAGATAAAGCAGGTTGC
ATGTCAACACCAGTTGAGCAACCCCCCAATCTGAGCTTCAGACTTGAACCTGCTGAAGTGAAGAAGTACA
ATAATGTGGAGAATGGACCAAGAGATGCTAAACGTGCACCAAACTTGAAAGGGGAACCAACAAATATGCC
AAAACCTAATTTGGGAAAATCAGCTACCAAAACAAATACCACTGTAGGCAGTAAAGTCAGGAAGACAGAA
ATTATAAGTTATCCTACACCAAACTTCAAAAACATTAAAGCCAAAGTTATATCCAGATCAGTGTTGCAAC
CCAAAGACACTTCCATAATGAAGGACACACCCAGCCCTCAGGTAACAGGGGGCTCTTCACCATCACCAGG
GCCTTCTAAACACTTGACAATGATGAACAAAGCACCAAGATCTGACTTTAAAGCCAGCAAAAAAGCAGAA
ATCCCAATTAACAAGACACACAAGCAACAGTTTAATAAACTCATTACCAGCCAGGCTGCGCAAGTTACAA
CTCATTCTAAAAATGCTTCACTCGGGGTTCCAAGAACAACATCTGCCACGAAATCGAATCAGGAGAATGT
TGACAAGACAGGTTCTCCTCATGCAGGGAGTGAGACCGGGTCTGTAGCTGCCTTCTTCCAGAAGATCAAA
GGCATTCTCCCCGTGAAAATGAAAAGCTCAGAGTGTTTGGAAGTGACTTACGTTTCCCACATCGATCAGA
TTAGCCCTGAAAAGGGTGAGCAGGACGGTGAGGCTCCCATGGAAAAGCAAGAGCTGGGAAAACAAGCCAC
GAATGAGATTTTTGAATCCAAGTCTCTATTGGTGGGCTCTGCACCCAAAACTTCCACCACGCCAGGAAGG
AGCAGTTCCAAGCCAGACTCGCGGAGCCTGAGGAAAACACCAGGTCTAAAAGCCAAAGTGGGTCCCACTG
CTGCCTGCCTGAGGAGGAAGAGTGAGAGTAGAACCCTAGGCTCCGACAGGGCCTTATCGCCTCAGAGGAT
CAGGCGCGTGTCCGGCTCTGGTGGTCATGCTGCCATCAACAAATATGAAGAGAAACCTCCCAAACAAGCA
TTTCAGAATGGGTCAGGACCCTTGTATCTGAAGCCTTTGGTACCCAGAGCTCACTCGCACTTGCTCAAAA
CTTCTCCAAAAGGTCCTTCAAGGAAGAGTCTGTTTACAGCTTTTAATTCAGTTGAAAAGGGCAGGCAGAA
GAATCCCAGGAGCCTATGCATCCAGACCCAGACAGCTCCAGATGTGCTGTCCTCCGAGAGAACGCTTGAG
TTGGCCCAATACAAGACAAAATGTGAAAGCCAAAGTGGATTCATCCTGCACCTCAGACAGCTTCTTTCCC
GTGGTAACACCAAGTTTGAAGCGCTGACCGTTGTGATCCAGCACCTCCTGTCTGAGCGGGAGGAAGCACT
GAAGCAACACAAAACCCTCTCTCAAGAACTTGTCAGCCTCCGGGGAGAGCTAGTTGCTGCTTCAAGCGCC
TGTGAGAAGCTAGAAAAGGCTAGGACTGACTTACAGACAGCGTATCAAGAATTTGTCCAGAAACTAAACC
AGCAGCATCAGACAGACCGGACGGAACTGGAGAACCGGCTGAAGGACTTATACACCGCAGAGTGTGAGAA
GCTTCAGAGCATTTACATTGAGGAGGCAGAAAAATATAAAACTCAACTGCAAGAGCAGTTTGACAACTTA
AACGCCGCCCATGAGACCACTAAGCTTGAGATTGAAGCTAGCCACTCGGAGAAGGTGGAATTGCTGAAGA
AGACCTATGAAACCTCCCTTTCAGAAATCAAGAAGAGCCATGAGATGGAGAAGAAGTCACTGGAGGATCT
GCTTAATGAGAAGCAGGAATCGCTGGAGAAACAAATCAATGATCTGAAGAGTGAAAACGATGCTTTAAAC
GAAAGGTTGAAATCAGAGGAGCAAAAGCAACTGTCAAGAGAGAAGGCGAATTCAAAAAACCCTCAGGTCA
TGTATCTGGAGCAAGAACTAGAAAGCCTGAAGGCTGTGTTAGAGATCAAGAATGAGAAGCTGCACCAGCA
GGACATGAAGCTAATGAAGATGGAAAAGCTGGTGGACAATAACACAGCATTGGTTGACAAGCTGAAGCGA
TTCCAGCAGGAAAACGAGGAGTTAAAAGCTCGCATGGACAAACACATGGCAATTTCAAGGCAACTTTCCA
CCGAGCAGGCCGCGCTGCAGGAGTCCCTTGAGAAGGAGTCGAAGGTCAACAAGAGACTGTCCATGGAGAA
CGAGGAACTTCTGTGGAAACTGCACAACGGAGACCTGTGCAGCCCCAAGAGATCCCCCACCTCCTCGGCC
ATCCCTTTCCAGTCCCCCAGGAATTCTGGTTCCTTCTCCAGCCCCAGCATCTCACCCAGATGA

Translation (1210 aa):
MNDDNSDRTEDGSRYVFIRDKNSNPSEYYQTSLSAQCPSVSHGDWNSDNPDAMVVDYEMDPAVDSSESVS
LSHQCVEELAYPEPSSDFMGKHEFTMYSELTCQSPALVNTGKPQDLHSNCDSLEAIQDEKFDPLKPCECR
SDDDYACGDSPEVLELKQTYGMKVDTANYTFIARHDIEQGQPLHAPGGLQTTVRDRNALSSCGRTPPHSS
KMYVRGVNYNRENFENLQATPSKTLNTTFTVISDVLMQTDSPDVGVQGQNSLGNVTKEYTDGTRRGLIGE
KEIQAVTLVSDGMEVPNGSASQEFYCVSEDDPNSETHSHGPYAQQEMGQNLRGTLPNCHVDGECPVLVPA
FEKSKTRVLGSECKVTVTEDPHIDSHDNDSDIQSSTEELTLRSVSGQRGSPYEMGWGENGGAICTDKAGC
MSTPVEQPPNLSFRLEPAEVKKYNNVENGPRDAKRAPNLKGEPTNMPKPNLGKSATKTNTTVGSKVRKTE
IISYPTPNFKNIKAKVISRSVLQPKDTSIMKDTPSPQVTGGSSPSPGPSKHLTMMNKAPRSDFKASKKAE
IPINKTHKQQFNKLITSQAAQVTTHSKNASLGVPRTTSATKSNQENVDKTGSPHAGSETGSVAAFFQKIK
GILPVKMKSSECLEVTYVSHIDQISPEKGEQDGEAPMEKQELGKQATNEIFESKSLLVGSAPKTSTTPGR
SSSKPDSRSLRKTPGLKAKVGPTAACLRRKSESRTLGSDRALSPQRIRRVSGSGGHAAINKYEEKPPKQA
FQNGSGPLYLKPLVPRAHSHLLKTSPKGPSRKSLFTAFNSVEKGRQKNPRSLCIQTQTAPDVLSSERTLE
LAQYKTKCESQSGFILHLRQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVSLRGELVAASSA
CEKLEKARTDLQTAYQEFVQKLNQQHQTDRTELENRLKDLYTAECEKLQSIYIEEAEKYKTQLQEQFDNL
NAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEMEKKSLEDLLNEKQESLEKQINDLKSENDALN
ERLKSEEQKQLSREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMKMEKLVDNNTALVDKLKR
FQQENEELKARMDKHMAISRQLSTEQAALQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSSA
IPFQSPRNSGSFSSPSISPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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