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Report for CCDS40329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40329.1 Public Mus musculus 8 Mtus1 23 108 98 CCDS HistoryNCBI Gene:102103Re-query CCDS DB by CCDS ID:40329.1Re-query CCDS DB by GeneID:102103See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093534.10 ENSMUSP00000091252.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093534.10Link to Ensembl Protein Viewer:ENSMUSP00000091252.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093534Re-query CCDS DB by Protein ID:ENSMUSP00000091252
Original member Current member NCBI NM_001005864.3 NP_001005864.1 Accepted alive Link to Nucleotide Sequence:NM_001005864.3Link to Protein Sequence:NP_001005864.1Re-query CCDS DB by Nucleotide ID:NM_001005864Re-query CCDS DB by Protein ID:NP_001005864Link to BLAST:NP_001005864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005864.1 520 Q5HZI1-4 520 99.8077% 0 1

Chromosomal Locations for CCDS 40329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40993420 40993633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40994548 40994645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40998347 40998463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40999436 40999531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40999643 40999716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41000761 41000866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41002305 41002519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41015388 41015454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41022380 41022594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41048048 41048086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41049985 41050116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41054522 41054711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGACTATACCAGGAGGATTTCGCAGTTGTACAGAAACTGATATTTCTTCAACGATCTTTATCAATTCTA
CACTCACACCCCCGGCCGGCTCAGAAAGGCAGTATGATGCTACCTTACTGGCACTGCTTGTCGTGGGATC
CTACAGCCTTTGTATAATTCCTTTGTTAGCCACGCTTACTAGGAAAAAAAGTGGTCATGCTGCCATCAAC
AAATATGAAGAGAAACCTCCCAAACAAGCATTTCAGAATGGGTCAGGACCCTTGTATCTGAAGCCTTTGG
TACCCAGAGCTCACTCGCACTTGCTCAAAACTTCTCCAAAAGGTCCTTCAAGGAAGAGTCTGTTTACAGC
TTTTAATTCAGTTGAAAAGGGCAGGCAGAAGAATCCCAGGAGCCTATGCATCCAGACCCAGACAGCTCCA
GATGTGCTGTCCTCCGAGAGAACGCTTGAGTTGGCCCAATACAAGACAAAATGTGAAAGCCAAAGTGGAT
TCATCCTGCACCTCAGACAGCTTCTTTCCCGTGGTAACACCAAGTTTGAAGCGCTGACCGTTGTGATCCA
GCACCTCCTGTCTGAGCGGGAGGAAGCACTGAAGCAACACAAAACCCTCTCTCAAGAACTTGTCAGCCTC
CGGGGAGAGCTAGTTGCTGCTTCAAGCGCCTGTGAGAAGCTAGAAAAGGCTAGGACTGACTTACAGACAG
CGTATCAAGAATTTGTCCAGAAACTAAACCAGCAGCATCAGACAGACCGGACGGAACTGGAGAACCGGCT
GAAGGACTTATACACCGCAGAGTGTGAGAAGCTTCAGAGCATTTACATTGAGGAGGCAGAAAAATATAAA
ACTCAACTGCAAGAGCAGTTTGACAACTTAAACGCCGCCCATGAGACCACTAAGCTTGAGATTGAAGCTA
GCCACTCGGAGAAGGTGGAATTGCTGAAGAAGACCTATGAAACCTCCCTTTCAGAAATCAAGAAGAGCCA
TGAGATGGAGAAGAAGTCACTGGAGGATCTGCTTAATGAGAAGCAGGAATCGCTGGAGAAACAAATCAAT
GATCTGAAGAGTGAAAACGATGCTTTAAACGAAAGGTTGAAATCAGAGGAGCAAAAGCAACTGTCAAGAG
AGAAGGCGAATTCAAAAAACCCTCAGGTCATGTATCTGGAGCAAGAACTAGAAAGCCTGAAGGCTGTGTT
AGAGATCAAGAATGAGAAGCTGCACCAGCAGGACATGAAGCTAATGAAGATGGAAAAGCTGGTGGACAAT
AACACAGCATTGGTTGACAAGCTGAAGCGATTCCAGCAGGAAAACGAGGAGTTAAAAGCTCGCATGGACA
AACACATGGCAATTTCAAGGCAACTTTCCACCGAGCAGGCCGCGCTGCAGGAGTCCCTTGAGAAGGAGTC
GAAGGTCAACAAGAGACTGTCCATGGAGAACGAGGAACTTCTGTGGAAACTGCACAACGGAGACCTGTGC
AGCCCCAAGAGATCCCCCACCTCCTCGGCCATCCCTTTCCAGTCCCCCAGGAATTCTGGTTCCTTCTCCA
GCCCCAGCATCTCACCCAGATGA

Translation (520 aa):
MTIPGGFRSCTETDISSTIFINSTLTPPAGSERQYDATLLALLVVGSYSLCIIPLLATLTRKKSGHAAIN
KYEEKPPKQAFQNGSGPLYLKPLVPRAHSHLLKTSPKGPSRKSLFTAFNSVEKGRQKNPRSLCIQTQTAP
DVLSSERTLELAQYKTKCESQSGFILHLRQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVSL
RGELVAASSACEKLEKARTDLQTAYQEFVQKLNQQHQTDRTELENRLKDLYTAECEKLQSIYIEEAEKYK
TQLQEQFDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEMEKKSLEDLLNEKQESLEKQIN
DLKSENDALNERLKSEEQKQLSREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMKMEKLVDN
NTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAALQESLEKESKVNKRLSMENEELLWKLHNGDLC
SPKRSPTSSAIPFQSPRNSGSFSSPSISPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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