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Report for CCDS40352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40352.1 Public Mus musculus 8 Tll1 23 108 98 CCDS HistoryNCBI Gene:21892Re-query CCDS DB by CCDS ID:40352.1Re-query CCDS DB by GeneID:21892See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066166.5 ENSMUSP00000070560.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066166.5Link to Ensembl Protein Viewer:ENSMUSP00000070560.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066166Re-query CCDS DB by Protein ID:ENSMUSP00000070560
Original member NCBI NM_009390.3 NP_033416.2 Updated not alive Link to Nucleotide Sequence:NM_009390.3Link to Protein Sequence:NP_033416.2Re-query CCDS DB by Nucleotide ID:NM_009390Re-query CCDS DB by Protein ID:NP_033416
Current member NCBI NM_009390.4 NP_033416.2 Accepted alive Link to Nucleotide Sequence:NM_009390.4Link to Protein Sequence:NP_033416.2Re-query CCDS DB by Nucleotide ID:NM_009390Re-query CCDS DB by Protein ID:NP_033416Link to BLAST:NP_033416.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033416.2 1013 Q62381-1 1013 99.9013% 0 1

Chromosomal Locations for CCDS 40352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 64016046 64016180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64017481 64017731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64025062 64025275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64038456 64038583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64041406 64041531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64047004 64047184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64051354 64051514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64053860 64053985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64056255 64056450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64070153 64070298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64071273 64071389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64074225 64074327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64085451 64085566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64093869 64093993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64098429 64098534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64101837 64102015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64117905 64118022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64118532 64118684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64121458 64121538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64124892 64125002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64205215 64205383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGGGTTTGCAAGCGCTCTCCCCGAGGATGCTCCTGTGGTTGGTGGTCTCGGGTATTGTTTTCTCCCGGG
TGCTGTGGGTCTGCGCTGGCCTCGATTATGATTACACTTTTGATGGGAACGAAGAGGACAAAACGGAGCC
TATAGATTACAAGGACCCGTGCAAAGCTGCTGTGTTTTGGGGTGACATCGCCTTAGATGATGAAGACTTA
AATATCTTCCAAATAGACAGGACAATTGACCTGACCCAGAGCCCCTTTGGAAAACTTGGACATATTACAG
GTGGCTTTGGAGACCATGGCATGCCAAAGAAGCGAGGGGCACTCTACCAACTTATAGAGAGGATCAGAAG
AATTGGCTCTGGCTTGGAGCAAAATAACACGATGAAGGGAAAAGCACCTCCAAAATTGTCAGAGCAAAGT
GAGAAAAATCGAGTTCCCAGAGCTGCTACCTCAAGAACGGAAAGGATATGGCCTGGGGGTGTCATTCCTT
ATGTCATAGGAGGAAACTTTACTGGCAGCCAGAGAGCCATGTTCAAGCAGGCCATGAGACACTGGGAAAA
GCACACCTGTGTGACGTTCACTGAGAGAAGTGATGAAGAAAGTTATATTGTGTTCACCTACAGGCCTTGT
GGATGCTGCTCCTATGTTGGTCGGCGGGGAAATGGCCCTCAGGCCATCTCTATTGGCAAGAACTGTGACA
AGTTTGGAATTGTTGTTCATGAACTGGGCCACGTGATAGGCTTCTGGCATGAACATACCCGCCCAGACCG
AGACAACCATGTCACCATCATTAGAGAGAACATCCAGCCAGGTCAAGAGTACAATTTTCTAAAGATGGAG
CCTGGAGAAGTGAACTCTCTTGGGGAAAGATATGATTTTGACAGTATCATGCACTACGCCAGGAACACCT
TCTCAAGAGGGATGTTTTTAGACACAATACTCCCCTCCCGTGATGATAATGGCATTCGTCCTGCAATTGG
TCAACGGACCCGGTTAAGCAAAGGAGACATTGCACAAGCAAGAAAGCTGTATCGATGCCCAGCATGTGGA
GAAACCCTGCAAGAATCCAGTGGCAACCTTTCTTCCCCAGGATTCCCAAATGGCTACCCTTCCTACACAC
ACTGCATCTGGAGAGTGTCTGTGACCCCGGGAGAAAAGATTGTCTTGAATTTTACCACAATGGACCTTTA
CAAAAGTAGTTTGTGCTGGTATGATTACATTGAAGTAAGAGATGGTTACTGGAGGAAGTCACCTCTCCTT
GGTAGATTCTGTGGGGACAAAGTGGCTGGAGTTCTTACATCTACGGACAGCAGAATGTGGATTGAGTTTC
GTAGCAGCAGTAACTGGGTAGGAAAAGGGTTTGCAGCTGTCTATGAAGCGATTTGTGGAGGGGAGATAAG
GAAAAACGAAGGGCAGATTCAGTCTCCCAATTACCCCGATGACTACCGACCAATGAAGGAGTGTGTATGG
AAAATAATGGTGTCCGAGGGCTACCATGTTGGACTGACCTTTCAGGCCTTTGAGATCGAAAGACATGACA
GCTGTGCCTATGACCACCTAGAAGTTCGAGATGGAGCCAGTGAGAACAGCCCTTTGATAGGACGGTTCTG
TGGTTATGACAAACCTGAAGATATAAGGTCTACTTCCAACACCCTGTGGATGAAGTTTGTCTCTGACGGG
ACTGTGAACAAGGCAGGGTTTGCTGCGAACTTTTTTAAAGAGGAAGATGAGTGTGCCAAACCTGACCGAG
GAGGCTGTGAACAGAGGTGTCTTAACACACTAGGCAGCTACCAGTGTGCCTGTGAGCCTGGCTATGAACT
GGGGCCAGACAGAAGAAGCTGTGAAGCTGCTTGCGGAGGACTTCTGACGAAGCTCAATGGCACCATAACC
ACCCCCGGCTGGCCCAAAGAGTACCCTCCAAACAAAAACTGTGTGTGGCAAGTGATCGCGCCAAGCCAGT
ACAGAATCTCTGTGAAGTTTGAGTTTTTTGAATTGGAAGGCAATGAAGTTTGCAAATACGATTACGTGGA
GATCTGGAGCGGCCTTTCCTCTGAGTCTAAACTGCATGGCAAGTTCTGTGGCGCTGACATACCTGAAGTG
ATGACTTCCCATTTCAACAACATGAGGATTGAATTCAAGTCAGACAACACTGTATCCAAGAAGGGCTTCA
AAGCACATTTTTTCTCAGATAAGGATGAGTGTTCAAAGGATAATGGTGGCTGTCAGCATGAGTGTGTCAA
CACGATGGGAAGTTACACGTGTCAGTGCCGGAATGGATTCGTGTTGCATGAGAACAAGCATGATTGCAAG
GAAGCCGAGTGTGAACAGAAGATACACAGCCCAAGTGGTCTCATCACCAGTCCCAACTGGCCAGACAAGT
ATCCAAGCAGGAAAGAGTGCACGTGGGTGATCAGTGCCATTCCTGGCCACCGCATCACATTAGCCTTCAA
TGAGTTTGAGGTTGAACAACATCAAGAATGTGCTTATGATCACTTGGAAATTTTTGATGGAGAAACGGAG
AAGTCACCAATACTTGGCCGACTATGTGGCAGCAAGATACCAGATCCCCTCATGGCTACTGGGAATGAAA
TGTTTATTCGGTTTATTTCTGATGCCTCTGTTCAAAGAAAAGGCTTTCAAGCTACACATTCCACAGAGTG
TGGTGGTCGATTGAAAGCAGAGTCAAAGCCTAGAGACCTGTACTCCCATGCTCAGTTTGGTGATAATAAC
TACCCAGGACAACTGGACTGTGAATGGTTGTTGGTGTCAGAACGAGGATCTCGACTTGAATTGTCCTTCC
AGACATTCGAAGTAGAAGAAGAAGCTGACTGTGGCTATGACTATGTTGAAGTCTTTGATGGTCTCAGTTC
AAAAGCTGTGGGTCTTGGTAGATTCTGTGGGTCAGGGCCACCAGAAGAAATCTATTCAATTGGAGATGTG
GCTTTGATTCATTTCCACACAGATGACACTATCAACAAGAAAGGATTTTATATAAGATATAAAAGTATAA
GATACCCGGAAACGATGCATGCCAAGAACTAA

Translation (1013 aa):
MGLQALSPRMLLWLVVSGIVFSRVLWVCAGLDYDYTFDGNEEDKTEPIDYKDPCKAAVFWGDIALDDEDL
NIFQIDRTIDLTQSPFGKLGHITGGFGDHGMPKKRGALYQLIERIRRIGSGLEQNNTMKGKAPPKLSEQS
EKNRVPRAATSRTERIWPGGVIPYVIGGNFTGSQRAMFKQAMRHWEKHTCVTFTERSDEESYIVFTYRPC
GCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKME
PGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRCPACG
ETLQESSGNLSSPGFPNGYPSYTHCIWRVSVTPGEKIVLNFTTMDLYKSSLCWYDYIEVRDGYWRKSPLL
GRFCGDKVAGVLTSTDSRMWIEFRSSSNWVGKGFAAVYEAICGGEIRKNEGQIQSPNYPDDYRPMKECVW
KIMVSEGYHVGLTFQAFEIERHDSCAYDHLEVRDGASENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSDG
TVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACGGLLTKLNGTIT
TPGWPKEYPPNKNCVWQVIAPSQYRISVKFEFFELEGNEVCKYDYVEIWSGLSSESKLHGKFCGADIPEV
MTSHFNNMRIEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQHECVNTMGSYTCQCRNGFVLHENKHDCK
EAECEQKIHSPSGLITSPNWPDKYPSRKECTWVISAIPGHRITLAFNEFEVEQHQECAYDHLEIFDGETE
KSPILGRLCGSKIPDPLMATGNEMFIRFISDASVQRKGFQATHSTECGGRLKAESKPRDLYSHAQFGDNN
YPGQLDCEWLLVSERGSRLELSFQTFEVEEEADCGYDYVEVFDGLSSKAVGLGRFCGSGPPEEIYSIGDV
ALIHFHTDDTINKKGFYIRYKSIRYPETMHAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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