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Report for CCDS40886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40886.1 Public Mus musculus X Araf 23 108 98 CCDS HistoryNCBI Gene:11836Re-query CCDS DB by CCDS ID:40886.1Re-query CCDS DB by GeneID:11836See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001155.10 ENSMUSP00000001155.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001155.10Link to Ensembl Protein Viewer:ENSMUSP00000001155.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001155Re-query CCDS DB by Protein ID:ENSMUSP00000001155
Original member Current member NCBI NM_009703.2 NP_033833.1 Accepted alive Link to Nucleotide Sequence:NM_009703.2Link to Protein Sequence:NP_033833.1Re-query CCDS DB by Nucleotide ID:NM_009703Re-query CCDS DB by Protein ID:NP_033833Link to BLAST:NP_033833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033833.1 604 P04627 604 100% 0 0

Chromosomal Locations for CCDS 40886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20849987 20850082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20850245 20850348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851466 20851568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851658 20851812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851930 20852028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20853318 20853459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20853560 20853587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20853677 20853816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20853913 20854115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20857612 20857788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20857878 20857924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20858394 20858512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20858742 20858873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20859685 20859819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20859979 20860113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGAACCACCACGAGGCCCTCCTGTTAGTGGGGCTGAGCCATCTCGGGCAGTTGGCACTGTCAAAGTGT
ACCTGCCTAACAAGCAACGCACAGTGGTGACTGTCCGGGAAGGCATGAGTGTCTATGACTCTTTGGACAA
GGCCCTGAAGGTGCGGGGTCTCAACCAGGACTGCTGTGTGGTCTACAGGCTCATCAAAGGAAGAAAGACA
GTCACTGCCTGGGACACAGCCATTGCGCCTCTGGATGGTGAGGAGCTCATTGTGGAGGTCCTAGAAGATG
TGCCACTGACCATGCACAATTTTGTACGGAAGACATTCTTCAGCCTGGCCTTCTGTGACTTCTGCCTTAA
GTTTCTGTTCCATGGATTCCGCTGCCAGACCTGTGGCTACAAGTTCCACCAGCATTGTTCCTCCAAGGTC
CCCACCGTCTGCGTTGACATGAGTACCAACCGCCGACAGTTCTACCACAGCATCCAGGATCTGTCTGGAG
GCTCCAGGCAGCAGGAGGCTCCCTCAAATCTCTCTGTGAATGAGCTGCTAACCCCCCAGGGTCCCAGCCC
CTTTACCCAGCAACGTGACCAGGAGCACTTCTCATTCCCTGCCCCTGCCAATCCCCCACTGCAGCGCATC
CGCTCCACATCTACTCCTAACGTCCACATGGTCAGCACCACAGCTCCCATGGACTCCAGCCTCATGCAGT
TTACTGCTCAGAGCTTCAGCACCGATGCTGCTGGTAGAGGTGGTGATGGAGCCCCTCGGGGTAGCCCTAG
CCCAGCTAGTGTGTCTTCAGGGAGGAAGTCCCCACATTCCAAGTTACCTTCAGAACAGCGGGAGCGGAAG
TCCTTGGCAGATGAAAAGAAAAAAGTGAAGAACCTGGGGTACCGGGACTCAGGCTATTACTGGGAGGTGC
CACCCAGTGAGGTACAGCTGTTGAAGAGGATCGGGACAGGCTCTTTTGGCACTGTGTTTCGGGGGCGTTG
GCATGGCGATGTAGCTGTGAAAGTGCTCAAGGTGGCCCAACCTACCGCTGAGCAGGCCCAGGCCTTCAAG
AATGAGATGCAGGTGCTCAGGAAGACACGGCATGTCAACATTTTGCTGTTCATGGGTTTCATGACTCGGC
CGGGGTTTGCCATCATCACACAGTGGTGTGAGGGTTCCAGCCTCTACCACCACCTACATGTGGCTGACAC
GCGCTTTGACATGGTCCAGCTCATTGATGTGGCCCGGCAGACTGCCCAGGGCATGGACTACCTCCACGCC
AAGAACATCATTCATCGAGACCTAAAGTCCAACAATATCTTCTTACATGAGGGGCTCACAGTCAAGATTG
GTGACTTCGGCCTGGCCACAGTGAAGACACGGTGGAGTGGGGCACAGCCCTTAGAGCAGCCCTCAGGGTC
TGTGCTATGGATGGCAGCTGAGGTGATCCGTATGCAGGACCCGAACCCCTACAGCTTCCAGTCGGATGTC
TATGCCTATGGTGTTGTGCTCTATGAGCTCATGACCGGCTCACTGCCCTACAGCCACATTGGCAGCCGTG
ACCAGATCATCTTTATGGTGGGCCGTGGCTATCTGTCTCCGGACCTCAGCAAAATCTTCAGTAATTGCCC
CAAAGCCATGAGGCGCCTGCTGACTGACTGCCTCAAGTTCCAGCGGGAGGAGCGGCCCCTATTTCCCCAG
ATTCTGGCCACGATCGAGCTACTGCAGCGGTCACTCCCCAAGATTGAGCGGAGTGCCTCCGAACCCTCCT
TGCACCGCACCCAGGCTGATGAGTTGCCTGCTTGCCTTCTCAGCGCAGCCCGTCTTGTGCCTTAG

Translation (604 aa):
MEPPRGPPVSGAEPSRAVGTVKVYLPNKQRTVVTVREGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKT
VTAWDTAIAPLDGEELIVEVLEDVPLTMHNFVRKTFFSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSKV
PTVCVDMSTNRRQFYHSIQDLSGGSRQQEAPSNLSVNELLTPQGPSPFTQQRDQEHFSFPAPANPPLQRI
RSTSTPNVHMVSTTAPMDSSLMQFTAQSFSTDAAGRGGDGAPRGSPSPASVSSGRKSPHSKLPSEQRERK
SLADEKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFGTVFRGRWHGDVAVKVLKVAQPTAEQAQAFK
NEMQVLRKTRHVNILLFMGFMTRPGFAIITQWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHA
KNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDV
YAYGVVLYELMTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKIFSNCPKAMRRLLTDCLKFQREERPLFPQ
ILATIELLQRSLPKIERSASEPSLHRTQADELPACLLSAARLVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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