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Report for CCDS40988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40988.1 Public Mus musculus X Atp11c 23 108 98 CCDS HistoryNCBI Gene:320940Re-query CCDS DB by CCDS ID:40988.1Re-query CCDS DB by GeneID:320940See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101527.2 ENSMUSP00000099066.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101527.2Link to Ensembl Protein Viewer:ENSMUSP00000099066.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101527Re-query CCDS DB by Protein ID:ENSMUSP00000099066
Original member Current member NCBI NM_001037863.2 NP_001032952.1 Accepted alive Link to Nucleotide Sequence:NM_001037863.2Link to Protein Sequence:NP_001032952.1Re-query CCDS DB by Nucleotide ID:NM_001037863Re-query CCDS DB by Protein ID:NP_001032952Link to BLAST:NP_001032952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032952.1 1129 Q9QZW0-1 1129 100% 0 0

Chromosomal Locations for CCDS 40988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 60229151 60229252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60236557 60236710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60238470 60238573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60240773 60240838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60242762 60242897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60245164 60245291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60247889 60247948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60260161 60260306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60261652 60261754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60266736 60266910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60269734 60269997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60276608 60276789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60277377 60277480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60278794 60278867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60280032 60280103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60280657 60280808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60281568 60281729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60289894 60290091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60290570 60290720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60291920 60292001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60292319 60292383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60293607 60293657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60295189 60295292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60296961 60297089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60304225 60304332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60307197 60307277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60309716 60309805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60321434 60321553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60403805 60403831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3390 nt):
ATGTTCCGCCGGACCCTCAACCGTTTGTGTGCTGGAGAAGAGAAACGAGTTGGTACACGCACAGTGTTTG
TT
GGCAATCATCCCATTTCTGGAACAGAACCTTATATTGCGCAAAGATTTTGTGATAATAGAATAGTCTC
A
TCTAAGTATACACTTTGGAATTTCCTCCCTAAGAATTTGTTTGAACAGTTTAGAAGAATTGCGAATTTT
TAT
TTCCTCATCATTTTCCTTGTACAGGTCACAGTAGACACACCAACCAGCCCAGTTACCAGTGGACTTC
CA
CTTTTTTTCGTTATAACTGTTACAGCAATCAAGCAGGGGTATGAAGATTGGCTTAGACACAGAGCTGA
T
AATGAAGTTAACAAAAGTGCTGTTTATATTATTGAAAATGCAAAGCGAGTGAGGAAAGAAAGTGAAAAA
ATC
AAGGTTGGTGATGTAGTAGAAGTACAGGCAAATGAAACCTTTCCCTGTGATCTTATACTTCTGTCAT
CC
TGCACAACTGATGGAACCTGTTATGTCACTACAGCCAGTCTTGATGGTGAATCTAATTGCAAGACACA
T
TATGCAGTACGAGATACCATTGCACTGTGTACAGCCGAATCCATTGATAATCTCCGAGCAACAATTGAA
TGT
GAGCAGCCTCAACCTGATCTCTACAGGTTTGTTGGGCGAATCAGTATCTATAGTAATAGTATTGAGG
CT
GTTGCCAGGTCTTTGGGACCTGAAAATCTTTTGCTGAAAGGAGCCACACTTAAAAATACCAAGAAGAT
A
TATGGAGTTGCTGTTTACACTGGGATGGAAACCAAAATGGCTTTGAACTACCAAGGGAAATCTCAGAAA
TGT
TCTGCTGTTGAAAAATCTATTAATGCCTTCTTGATTGTTTATTTATTTATCTTACTGACCAAAGCTG
CA
GTATGCACAACTCTTAAGTATGTTTGGCAAAGTTCCCCATACAATGATGAACCATGGTATAACCAAAA
G
ACTCAAAAGGAACGGGAAACTTTTCAGGTTTTGAAAATGTTCACTGACTTTTTATCATTCATGGTTCTT
TTC
AACTTCATTATACCTGTCTCCATGTATGTCACAGTAGAAATGCAGAAATTTTTAGGGTCATTCTTTA
TT
TCATGGGATAAAGACTTTTTTGATGAAGAAATTAATGAAGGAGCCTTGGTTAATACATCAGACCTTAA
T
GAAGAACTTGGTCAGGTGGACTATGTATTTACAGATAAGACTGGGACACTCACTGAAAATAGCATGGAA
TTC
ATTGAATGCTGCATAGATGGGCACAAATATAAAGGCACAACTCAGGAAGTTGATGGATTATCTCAGA
CT
GATGGGCCCTTAGCCTATTTTGATAAAGCAGATAAGAACCGAGAGGCACTCTTTCTCCGTGCCCTATG
C
TTATGTCACACTGTAGAAATGAAAACAAATGATGATGTTGATGGACCTGTAGAAGGAGCCGGATTCACA
TAT
ATCTCCTCCTCACCAGATGAAATAGCTTTGGTGAAAGGAGCTAAAAGGTTTGGGTTCACATTTTTGG
GA
AATCAGAATGGATATATCAGAGTAGAGAACCAAAGAAAAGAAATAGAAGAGTATGAACTTCTCCACAC
C
TTAAATTTTGATTCTGTCCGCCGACGTATGAGTGTAATTGTAAGGACCCAAAAAGGAGATATTCTACTT
TTC
TGTAAAGGAGCAGATTCATCAATTTTTCCCAGGGTACATAGCCATCAAATTGAGTTAACCAAAGACC
AT
GTGGAACGTAATGCAATGGATGGGTATCGGACTCTTTGTGTAGCCTTCAAAGAAATTCCTCCAGATGA
T
TTTGAAAGAATCAATGCACAACTAGTAGAGGCAAAAATGGCCCTACAAGATAGAGAAGAAAAACTGGAA
AAG
GTTTTTGATGAGATTGAGACTAACATGAATTTAATTGGAGCCACTGCTGTGGAAGACAAGCTGCAAG
AT
CAGGCTGCAGAGACCATTGAAGCTCTCCATGCAGCTGGCTTAAAAGTCTGGGTGCTTACTGGGGACAA
G
ATGGAAACAGCCAAATCTACTTGCTATGCCTGCCGCCTTTTCCAAACCAATACTGAGCTCTTGGAACTG
ACC
ACAAAAACCATTGAAGAGAGTGAAAGGAAAGAAGATCGATTACATGAACTGCTAATAGAATATCGTA
AG
AAGTTGCTGCATGAATTTCCTAAAAGCACTAGAAGCCTTAAAAAAGCATGGACAGAACATCAGGAATA
T
GGATTAATCATTGATGGCTCCACATTGTCACTCATACTAAATTCTAGTCAAGATTGTAGTTCAAACAAC
TAT
AAAAGTATTTTTCTACAAATCTGTATGAAATGCACTGCAGTGCTCTGCTGCCGGATGGCACCATTAC
AA
AAAGCCCAGATTGTCAGAATGGTGAAGAACTTGAAAGGCAGCCCCATAACACTGTCAATAGGTGATGG
T
GCCAATGATGTCAGTATGATTTTGGAATCCCATGTGGGAATAGGTATTAAAGGAAAAGAAGGCCGTCAA
GCA
GCCAGGAATAGTGATTATTCTGTTCCAAAGTTTAAGCATTTAAAGAAACTGCTATTGGTTCATGGAC
AT
CTATACTATGTGAGAATAGCACATCTTGTACAATATTTCTTCTACAAGAACCTTTGTTTCATTTTGCC
A
CAATTTTTGTACCAGTTCTTCTGTGGATTCTCACAACAGCCACTCTATGATGCTGCTTATCTTACAATG
TAC
AATATCTGTTTCACATCCCTGCCCATCCTGGCTTATAGTCTACTGGAACAGCACATCAACATTGATA
CT
CTGACCGCAGACCCTCGATTGTATATGAAAATTACCGGTAATGCTATGTTACAGTTGGGGCCCTTCTT
A
CATTGGACATTTCTGGCTGCATTTGAAGGGACAGTATTCTTCTTTGGGACTTATTTCCTTTTTCAGACT
TCA
TCCTTAGAAGACAATGGAAAGATTTATGGAAATTGGACATTTGGAACCATTGTTTTTACAGTCTTAG
TA
TTCACCGTAACTCTGAAGCTCGCCTTGGATACCCGGTTCTGGACATGGATAAATCATTTTGTGATTTG
G
GGTTCTCTAGCCTTTTATGTTTTTTTCTCATTCTTCTGGGGAGGAATTATTTGGCCTTTTCTGAAACAA
CAG
AGAATGTATTTTGTGTTTGCTCAAATGCTCTGTTCTGTATCCACATGGTTGGCTATAATCCTTTTAA
TA
TTTATCAGCCTTTTCCCTGAGATTCTCCTAATAGTTGTAAAGAATGTTCGAAGAAGAAGTGCCAGGAG
A
AATCTGAGCTGTAGAAGGGCATCTGACTCATTATCCGCCAGACCTTCAGTCAGACCTCTTCTTTTACGA
ACA
TTCTCAGACGAATCTAATATATTGTAA


Translation (1129 aa):
MFRRTLNRLCAGEEKRVGTRTVFVGNHPISGTEPYIAQRFCDNRIVSSKYTLWNFLPKNLFEQFRRIANF
Y
FLIIFLVQ
VTVDTPTSPVTSGLPLFFVITVTAIKQGYEDWLRHRADNEVNKSAVYIIENAKRVRKESEK
I
K
VGDVVEVQANETFPCDLILLSSCTTDGTCYVTTASLDGESNCKTHYAVRDTIALCTAESIDNLRATIE
C
EQPQPDLY
RFVGRISIYSNSIEAVARSLGPENLLLKGATLKNTKKIYGVAVYTGMETKMALNYQGKSQK
C
SAVE
KSINAFLIVYLFILLTKAAVCTTLKYVWQSSPYNDEPWYNQKTQKERETFQVLKMFTDFLSFMVL
F
NFIIPVSMYVTVEMQKFLGSFFISWDKDFFDEEINEGALVNTSDLNEELGQ
VDYVFTDKTGTLTENSME
F
IECCIDGHKYKGTTQEVDGLSQTDGPLAYFDKADK
NREALFLRALCLCHTVEMKTNDDVDGPVEGAGFT
Y
ISSSPDEIALVKGAK
RFGFTFLGNQNGYIRVENQRKEIEEYELLHTLNFDSVRRRMSVIVRTQKGDILL
F
CKGADSSIFPRVHSHQIELTKDHVERNAM
DGYRTLCVAFKEIPPDDFERINAQLVEAKMALQDREEKLE
K
VFDEIETNMNLIGATAVED
KLQDQAAETIEALHAAGLKVWVLTGDKMETAKSTCYACRLFQTNTELLEL
T
TKTIEESERKEDRLHELLIEYRKKLLHEFPKSTRSLK
KAWTEHQEYGLIIDGSTLSLILNSSQDCSSNN
Y
KSIFLQICMKCTAVLCCRMAPLQKAQ
IVRMVKNLKGSPITLSIGDGANDVSMILESHVGIGIKGKEGRQ
A
ARNSDYSVPKFKHLKKLLLVHGHLYYVRIAHLVQYFFYK
NLCFILPQFLYQFFCGFSQQPLYDAAYLTM
Y
NICFTSLPILAYSLLEQHINIDTLTADPRLY
MKITGNAMLQLGPFLHWTFLAAFEGTVFFFGTYFLFQT
S
SLEDNGK
IYGNWTFGTIVFTVLVFTVTLKLALDTRFWTWINHFVIWGSLAFYVFFSFFWGGIIWPFLKQ
Q
RMYFVFAQMLCSVSTWLAIILLIFISLFPEILLIVVKNVRRRSAR
RNLSCRRASDSLSARPSVRPLLLR
T
FSDESNIL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser