NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41187.1 Public Mus musculus X Acot9 23 108 98 CCDS HistoryNCBI Gene:56360Re-query CCDS DB by CCDS ID:41187.1Re-query CCDS DB by GeneID:56360See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026324.9 ENSMUSP00000026324.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026324.9Link to Ensembl Protein Viewer:ENSMUSP00000026324.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000026324Re-query CCDS DB by Protein ID:ENSMUSP00000026324
Original member Current member NCBI NM_019736.4 NP_062710.2 Accepted alive Link to Nucleotide Sequence:NM_019736.4Link to Protein Sequence:NP_062710.2Re-query CCDS DB by Nucleotide ID:NM_019736Re-query CCDS DB by Protein ID:NP_062710Link to BLAST:NP_062710.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062710.2 439 Q9R0X4 439 100% 0 0

Chromosomal Locations for CCDS 41187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155262655 155262674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155269659 155269753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155271952 155271997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155272972 155273142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155273392 155273429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155281611 155281694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155282051 155282154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155286289 155286365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155293909 155293976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155295163 155295274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155295422 155295512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155295683 155295768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155296325 155296412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155296581 155296731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155297346 155297434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGAAGCGGGCAGCGATACGGCTTTGGACCTTGAACAAGGGGCTTCTTACTCATGGCAGAGGACTGTCTC
AAGGATCCCAATACAAAATAAGTGAACCCTTACACATCCATCAAGTTCGAGACAAGCTGCGGGAGATAGT
AGGCGTATCCACAGTCTGGAGAGACCATGTAAAAGCAATGGAGGAAAGGAAGTTACTTCATAGTTTTTTG
CCTAAATCACAGAAAGTCCTACCACCGAGGAAAATGAGGGATAGTTACATCGAAGTTCTCCTACCTTTGG
GTACTGACCCTGAACTACGAGACAAATATGTGACTGTTCAAAATACAGTAAGATTTGGCAGGATTCTTGA
GGACCTTGACAGCCTAGGAGTTCTTGTTTGCTACATGCACAACCACAATCATTCTACCAAGATGTCTCCT
TTATCAATAGTTACAGTCCTGGTGGACAAGATTGATATGTGTAAACACAGCTTAAGCCCTGAACAGGACA
TTAAGTTCACTGGCCATGTTAGCTGGGTTGGAAATACATCCATGGAAGTGAAGATGAAAATGTTCCAGCT
GCACAATGATGAGAAATATTGGCCTGTTTTGGATGCAACCTTTGTAATGGTGGCTCGAGATTCTGAAAAT
AAGGGGCCGGCATTTGTAAATCCACTCATTCCGGAAAATAAAGAGGAAGAAGAGCTCTTTAAACAAGGAG
AATTGAACAAGAGCCGAAGGATTGCCTTTAGCACCAGTTCATTACTGAAAGTGGCTCCCAGTTCTGAGGA
GAGGAATATCATACATGAACTGTTCCTTACCACACTGGATCCAAAGACTATAAGTTTTCAGAGTCGAATT
TTGCCTCCTAAAGCAGTGTGGATGGAGGATACAAAACTCAAGAGCTTGGATATTTGTCACCCTCAGGAAC
GAAACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAAGCATATGAACTTGCATGGGCTACTGC
TTGTAGCTTTGGCGGTTCCCGGCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAGCCTGTTGAA
GTTGGTTCATTGCTCTTTCTTTCTTCACAGGTATGCTTCACCCAGGACAATTACATCCAAGTCAGAGTCC
ATAGTGAAGTGTCTTCTCTTGACAGTCGTGAGCATATGACCACCAATGTCTTTCATTTTACATTCATGTC
GGAAAAAGAAGTACCCTTGATTTTCCCTAAAACATATGGAGAGTCCATGTTGTATTTAGATGGACAGCGA
CATTTCAAGTCTATGAGTACCCCAGTGACCTTGAAAAAGGACTACCCTGTGGAGCCCTAG

Translation (439 aa):
MKRAAIRLWTLNKGLLTHGRGLSQGSQYKISEPLHIHQVRDKLREIVGVSTVWRDHVKAMEERKLLHSFL
PKSQKVLPPRKMRDSYIEVLLPLGTDPELRDKYVTVQNTVRFGRILEDLDSLGVLVCYMHNHNHSTKMSP
LSIVTVLVDKIDMCKHSLSPEQDIKFTGHVSWVGNTSMEVKMKMFQLHNDEKYWPVLDATFVMVARDSEN
KGPAFVNPLIPENKEEEELFKQGELNKSRRIAFSTSSLLKVAPSSEERNIIHELFLTTLDPKTISFQSRI
LPPKAVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIMFQKPVE
VGSLLFLSSQVCFTQDNYIQVRVHSEVSSLDSREHMTTNVFHFTFMSEKEVPLIFPKTYGESMLYLDGQR
HFKSMSTPVTLKKDYPVEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH