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Report for CCDS41866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41866.1 Public Homo sapiens 12 GALNT9 24 110 108 CCDS HistoryNCBI Gene:50614Re-query CCDS DB by CCDS ID:41866.1Re-query CCDS DB by GeneID:50614See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397325.6 ENSP00000380488.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397325.6Link to Ensembl Protein Viewer:ENSP00000380488.2Re-query CCDS DB by Nucleotide ID:ENST00000397325Re-query CCDS DB by Protein ID:ENSP00000380488
Original member Current member EBI ENST00000541995.5 ENSP00000440544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541995.5Link to Ensembl Protein Viewer:ENSP00000440544.1Re-query CCDS DB by Nucleotide ID:ENST00000541995Re-query CCDS DB by Protein ID:ENSP00000440544
Original member Current member NCBI NM_021808.3 NP_068580.2 Accepted alive Link to Nucleotide Sequence:NM_021808.3Link to Protein Sequence:NP_068580.2Re-query CCDS DB by Nucleotide ID:NM_021808Re-query CCDS DB by Protein ID:NP_068580Link to BLAST:NP_068580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068580.2 237 Q9HCQ5-2 237 100% 0 0

Chromosomal Locations for CCDS 41866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 132197107 132197253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132197792 132197959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132199174 132199269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132201124 132201261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132203505 132203669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGAGGTGCTGCCCTGCTCCCGCGTGGCCCACATCGAGCGCACCAGGAAGCCCTACAACAACGACATTG
ACTACTATGCCAAGCGCAACGCCCTGCGCGCCGCCGAGGTGTGGATGGATGACTTCAAGTCCCACGTGTA
CATGGCCTGGAACATCCCCATGTCGAACCCAGGGGTGGACTTCGGGGACGTGTCTGAGAGGCTGGCCCTG
CGTCAGAGGCTGAAGTGTCGCAGCTTCAAGTGGTACCTGGAGAACGTGTACCCGGAGATGAGGGTCTACA
ACAACACCCTCACGTACGGAGAGGTGAGAAACAGCAAAGCCAGTGCCTACTGTCTGGACCAGGGAGCGGA
GGACGGCGACCGGGCGATCCTCTACCCCTGCCACGGGATGTCCTCCCAGCTGGTGCGGTACAGCGCTGAT
GGACTGCTGCAGCTGGGGCCTCTGGGCTCCACAGCCTTCTTGCCTGACTCCAAGTGTCTGGTGGATGACG
GCACGGGCCGCATGCCCACCCTGAAGAAGTGTGAGGATGTGGCGCGGCCAACACAGCGGCTGTGGGACTT
CACCCAGAGTGGCCCCATTGTGAGCCGGGCCACGGGCCGCTGCCTGGAGGTGGAGATGTCCAAAGATGCC
AACTTTGGGCTCCGGCTGGTGGTACAGAGGTGCTCGGGGCAGAAGTGGATGATCAGAAACTGGATCAAAC
ACGCACGGCACTGA

Translation (237 aa):
MEVLPCSRVAHIERTRKPYNNDIDYYAKRNALRAAEVWMDDFKSHVYMAWNIPMSNPGVDFGDVSERLAL
RQRLKCRSFKWYLENVYPEMRVYNNTLTYGEVRNSKASAYCLDQGAEDGDRAILYPCHGMSSQLVRYSAD
GLLQLGPLGSTAFLPDSKCLVDDGTGRMPTLKKCEDVARPTQRLWDFTQSGPIVSRATGRCLEVEMSKDA
NFGLRLVVQRCSGQKWMIRNWIKHARH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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