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Report for CCDS427.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
427.2 Public Homo sapiens 1 C1orf122 24 110 108 CCDS HistoryNCBI Gene:127687Re-query CCDS DB by CCDS ID:427.2Re-query CCDS DB by GeneID:127687See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 427.1
The coding region has been updated to start at a better supported upstream initiation codon, which is in a different reading frame, and to represent a protein that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 427.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373042.5 ENSP00000362133.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373042.5Link to Ensembl Protein Viewer:ENSP00000362133.4Re-query CCDS DB by Nucleotide ID:ENST00000373042Re-query CCDS DB by Protein ID:ENSP00000362133
Original member Current member NCBI NM_198446.3 NP_940848.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198446.3Link to Protein Sequence:NP_940848.2Re-query CCDS DB by Nucleotide ID:NM_198446Re-query CCDS DB by Protein ID:NP_940848Link to BLAST:NP_940848.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940848.2 110 Q6ZSJ8-1 110 100% 0 0

Chromosomal Locations for CCDS 427.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37808405 37808439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37808531 37808732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37808978 37809073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGAATGGGGCCCGGGCTCAGACTGGTCACGGGGGGAGGCTGCCGGCGTGGACCGCGGGAAGGCGGGGC
TGGGGCTCGGCGGGAGGCCACCCCCACAGCCGCCCCGGGAGGAGCGCGCCCAGCAGCTGCTGGACGCGGT
GGAGCAGCGGCAGCGGCAGCTCCTGGACACCATCGCAGCCTGCGAGGAGATGTTACGGCAGCTGGGCCGC
CGGCGCCCGGAGCCGGCTGGTGGCGGGAACGTCTCAGCCAAACCTGGAGCGCCCCCCCAGCCGGCTGTCT
CCGCCAGAGGCGGCTTTCCAAAGGATGCTGGCGATGGAGCTGCGGAGCCCTGA

Translation (110 aa):
MEWGPGSDWSRGEAAGVDRGKAGLGLGGRPPPQPPREERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGR
RRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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