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Report for CCDS42772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42772.1 Public Homo sapiens 2 NOSTRIN 24 110 108 CCDS HistoryNCBI Gene:115677Re-query CCDS DB by CCDS ID:42772.1Re-query CCDS DB by GeneID:115677See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397206.6 ENSP00000380390.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397206.6Link to Ensembl Protein Viewer:ENSP00000380390.2Re-query CCDS DB by Nucleotide ID:ENST00000397206Re-query CCDS DB by Protein ID:ENSP00000380390
Original member Current member EBI ENST00000445023.6 ENSP00000404413.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445023.6Link to Ensembl Protein Viewer:ENSP00000404413.2Re-query CCDS DB by Nucleotide ID:ENST00000445023Re-query CCDS DB by Protein ID:ENSP00000404413
Original member Current member NCBI NM_052946.4 NP_443178.2 Accepted alive Link to Nucleotide Sequence:NM_052946.4Link to Protein Sequence:NP_443178.2Re-query CCDS DB by Nucleotide ID:NM_052946Re-query CCDS DB by Protein ID:NP_443178Link to BLAST:NP_443178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443178.2 428 Q8IVI9-3 428 100% 0 0

Chromosomal Locations for CCDS 42772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168828195 168828220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168828420 168828501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168831472 168831534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168834227 168834325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168842992 168843117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168851084 168851182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168851279 168851404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168855352 168855460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168856690 168856778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168859512 168859637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168860795 168860909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168861960 168862049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168864834 168864970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGAAATCCACAGCGGACCTGCATCAAAAACTTGGCAAAGCAATTGAATTGGAAGCAATAAAACCGACTT
ATCAAGTCCTAAATGTACAAGAGAAGAAGAGAAAATCACTTGACAATGAAGTTGAAAAGACAGCAAATCT
TGTCATTAGCAACTGGAATCAGCAAATTAAGGCCAAGAAGAAATTAATGGTTAGTACCAAGAAACATGAA
GCACTTTTCCAGCTTGTAGAAAGCTCCAAGCAATCTATGACTGAGAAGGAGAAGCGGAAGCTCCTCAATA
AACTGACAAAATCAACTGAAAAGTTGGAAAAGGAAGATGAAAATTACTACCAAAAAAACATGGCGGGTTA
TTCTACCAGACTGAAATGGGAAAACACACTAGAGAACTGCTACCAGAGCATTCTGGAGCTGGAGAAGGAA
AGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGCCAAACCCTGA
CCACATGCCACACGCAGATTCACTGTGCCATCAGCAAGATTGACATTGAAAAAGATATCCAGGCTGTAAT
GGAAGAAACTGCAATTTTATCTACAGAAAACAAATCTGAGTTCCTGTTAACGGATTACTTTGAAGAAGAT
CCTAACAGTGCAATGGATAAAGAGAGACGAAAGTCTTTACTAAAACCAAAATTATTGAGACTGCAGAGAG
ACATTGAAAAAGCCTCAAAAGACAAGGAAGGCCTGGAACGAATGCTTAAAACGTACTCCAGCACCTCCTC
CTTCTCTGATGCAAAGAGCCAGAAAGACACAGCAGCGTTAATGGATGAGAACAATTTGAAACTAGACCTT
TTGGAAGCGAACTCCTACAAACTGTCATCAATGTTAGCAGAACTTGAGCAAAGACCTCAACCCAGCCATC
CTTGTAGTAATTCCATCTTCAGGTGGAGGGAAAAGGAGCATACTCATAGCTATGTGAAAATATCTCGGCC
TTTTTTAATGAAGAGATTAGAGAATATTGTGAGCAAGGCATCTTCTGGTGGGCAGAGCAATCCAGGTTCT
TCAACTCCAGCCCCTGGTGCAGCCCAGCTCAGCAGCAGACTTTGCAAGGCCTTGTATTCTTTTCAAGCCA
GGCAAGATGATGAGTTGAATTTGGAAAAGGGTGACATTGTGATTATACACGAGAAAAAAGAAGGAGGATG
GTGGTTTGGATCTTTGAATGGGAAAAAAGGCCATTTTCCTGCCGCTTATGTGGAGGAGTTACCTTCAAAT
GCTGGCAACACAGCTACAAAGGCATAA

Translation (428 aa):
MKSTADLHQKLGKAIELEAIKPTYQVLNVQEKKRKSLDNEVEKTANLVISNWNQQIKAKKKLMVSTKKHE
ALFQLVESSKQSMTEKEKRKLLNKLTKSTEKLEKEDENYYQKNMAGYSTRLKWENTLENCYQSILELEKE
RIQLLCNNLNQYSQHISLFGQTLTTCHTQIHCAISKIDIEKDIQAVMEETAILSTENKSEFLLTDYFEED
PNSAMDKERRKSLLKPKLLRLQRDIEKASKDKEGLERMLKTYSSTSSFSDAKSQKDTAALMDENNLKLDL
LEANSYKLSSMLAELEQRPQPSHPCSNSIFRWREKEHTHSYVKISRPFLMKRLENIVSKASSGGQSNPGS
STPAPGAAQLSSRLCKALYSFQARQDDELNLEKGDIVIIHEKKEGGWWFGSLNGKKGHFPAAYVEELPSN
AGNTATKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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