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Report for CCDS43301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43301.1 Public Homo sapiens 5 ATPSCKMT 24 110 108 CCDS HistoryNCBI Gene:134145Re-query CCDS DB by CCDS ID:43301.1Re-query CCDS DB by GeneID:134145See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511437.6 ENSP00000422338.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511437.6Link to Ensembl Protein Viewer:ENSP00000422338.1Re-query CCDS DB by Nucleotide ID:ENST00000511437Re-query CCDS DB by Protein ID:ENSP00000422338
Original member Current member NCBI NM_199133.4 NP_954584.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199133.4Link to Protein Sequence:NP_954584.2Re-query CCDS DB by Nucleotide ID:NM_199133Re-query CCDS DB by Protein ID:NP_954584Link to BLAST:NP_954584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954584.2 233 Q6P4H8-1 233 100% 0 0

Chromosomal Locations for CCDS 43301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10227441 10227647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10235211 10235261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10236478 10236615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10239067 10239356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10249858 10249873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGAGGGAGGAGGAGGTATACCCCTAGAAACACTTAAAGAAGAAAGTCAGTCAAGACATGTTCTACCTG
CAAGTTTTGAAGTCAACAGTTTGCAGAAAAGCAACTGGGGGTTCTTACTTACTGGGCTTGTGGGTGGCAC
CCTGGTGGCTGTGTACGCTGTAGCCACGCCGTTTGTAACGCCAGCCCTTCGAAAAGTCTGTTTGCCGTTT
GTACCTGCAACTACGAAGCAGATTGAAAATGTTGTGAAAATGTTGCGATGCCGAAGAGGATCCCTTGTGG
ACATCGGTAGTGGGGACGGACGCATTGTCATAGCGGCTGCGAAGAAAGGGTTCACAGCAGTTGGTTATGA
ATTAAACCCATGGCTAGTTTGGTATTCCAGATACCGCGCTTGGCGAGAAGGTGTGCATGGATCTGCCAAA
TTTTATATTTCAGATTTGTGGAAGGTTACTTTTTCGCAGTACTCGAACGTTGTTATTTTCGGTGTGCCTC
AGATGATGCTGCAGTTGGAGAAGAAACTTGAACGTGAACTTGAGGATGATGCACGAGTTATTGCTTGCCG
GTTCCCTTTCCCACATTGGACTCCAGACCACGTCACGGGGGAGGGGATAGACACAGTGTGGGCATATGAT
GCAAGCACTTTTAGAGGCCGTGAAAAGAGGCCCTGTACATCGATGCATTTCCAGCTGCCCATTCAAGCAT
AA

Translation (233 aa):
MEGGGGIPLETLKEESQSRHVLPASFEVNSLQKSNWGFLLTGLVGGTLVAVYAVATPFVTPALRKVCLPF
VPATTKQIENVVKMLRCRRGSLVDIGSGDGRIVIAAAKKGFTAVGYELNPWLVWYSRYRAWREGVHGSAK
FYISDLWKVTFSQYSNVVIFGVPQMMLQLEKKLERELEDDARVIACRFPFPHWTPDHVTGEGIDTVWAYD
ASTFRGREKRPCTSMHFQLPIQA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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