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Report for CCDS44006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44006.1 Public Homo sapiens X SPANXB1 24 110 108 CCDS HistoryNCBI Gene:728695Re-query CCDS DB by CCDS ID:44006.1Re-query CCDS DB by GeneID:728695See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449283.2 ENSP00000405202.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449283.2Link to Ensembl Protein Viewer:ENSP00000405202.1Re-query CCDS DB by Nucleotide ID:ENST00000449283Re-query CCDS DB by Protein ID:ENSP00000405202
Original member Current member NCBI NM_032461.4 NP_115850.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032461.4Link to Protein Sequence:NP_115850.2Re-query CCDS DB by Nucleotide ID:NM_032461Re-query CCDS DB by Protein ID:NP_115850Link to BLAST:NP_115850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115850.2 103 Q9NS25 103 100% 0 0

Chromosomal Locations for CCDS 44006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 141002694 141002783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 141003431 141003652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGGGCCAACAATCCAGTGTCCGCAGGCTGAAGAGGAGCGTCCCCTGTGAATCCAACGAGGCCAACGAGG
CCAATGAGGCCAACAAGACGATGCCGGAGACCCCAACTGGGGACTCAGACCCGCAACCTGCTCCTAAAAA
AATGAAAACATCTGAGTCCTCGACCATACTAGTGGTTCGCTACAGGAGGAACGTGAAAAGAACATCTCCA
GAGGAACTGCTGAATGACCACGCCCGAGAGAACAGAATCAACCCCGACCAAATGGAGGAGGAGGAATTCA
TAGAAATAACGACTGAAAGACCTAAAAAGTAG

Translation (103 aa):
MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNVKRTSP
EELLNDHARENRINPDQMEEEEFIEITTERPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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