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Report for CCDS44805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44805.1 Public Homo sapiens 12 RAD51AP1 22 109 92 CCDS HistoryNCBI Gene:10635Re-query CCDS DB by CCDS ID:44805.1Re-query CCDS DB by GeneID:10635See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228843.13 ENSP00000228843.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000228843.13Link to Ensembl Protein Viewer:ENSP00000228843.9Re-query CCDS DB by Nucleotide ID:ENST00000228843Re-query CCDS DB by Protein ID:ENSP00000228843
Original member NCBI NM_001130862.1 NP_001124334.1 Updated not alive Link to Nucleotide Sequence:NM_001130862.1Link to Protein Sequence:NP_001124334.1Re-query CCDS DB by Nucleotide ID:NM_001130862Re-query CCDS DB by Protein ID:NP_001124334
Current member NCBI NM_001130862.2 NP_001124334.1 Accepted alive Link to Nucleotide Sequence:NM_001130862.2Link to Protein Sequence:NP_001124334.1Re-query CCDS DB by Nucleotide ID:NM_001130862Re-query CCDS DB by Protein ID:NP_001124334Link to BLAST:NP_001124334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124334.1 352 Q96B01-1 352 100% 0 0

Chromosomal Locations for CCDS 44805.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4538940 4538956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4541884 4541933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4543763 4543904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4545782 4545832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4546309 4546418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4548092 4548178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4548687 4548836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4552983 4553147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4556353 4556502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4558857 4558993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGTGCGGCCTGTGAGACATAAGAAACCAGTCAATTACTCACAGTTTGACCACTCTGACAGTGATGATG
AT
TTTGTTTCTGCAACTGTACCTTTAAACAAGAAATCCAGAACAGCACCAAAGGAGTTAAAACAAGATAA
A
CCAAAACCTAACTTGAACAATCTCCGGAAAGAAGAAATCCCAGTACAAGAGAAAACCCCTAAAAAAAGA
CTC
CCTGAAGGTACTTTTAGTATTCCAGCTAGTGCAGTGCCTTGTACAAAGATGGCTTTAGATGACAAGC
TC
TACCAGAGAGACTTAGAAGTTGCACTAGCTTTATCAGTGAAGGAACTTCCAACAGTCACCACTAATGT
G
CAGAACTCTCAAGATAAAAGCATTGAAAAACATGGCAGTAGTAAAATAGAAACAATGAATAAGTCTCCT
CAT
ATCTCTAATTGCAGTGTAGCCAGTGATTATTTAGATTTGGATAAGATTACTGTGGAAGATGATGTTG
GT
GGTGTTCAAGGGAAAAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGATTCTTCTGGAAGG
C
AGTGATGGTGATAGTGCTAATGACACTGAACCAGACTTTGCACCTGGTGAAGATTCTGAGGATGATTCT
GAT
TTTTGTGAGAGTGAGGATAATGACGAAGACTTCTCTATGAGAAAAAGTAAAGTTAAAGAAATTAAAA
AG
AAAGAAGTGAAGGTAAAATCCCCAGTAGAAAAGAAAGAGAAGAAATCTAAATCCAAATGTAATGCTTT
G
GTGACTTCGGTGGACTCTGCTCCAGCTGCCGTCAAATCAGAATCTCAGTCCTTGCCAAAAAAGGTTTCT
CTG
TCTTCAGATACCACTAGGAAACCATTAGAAATACGCAGTCCTTCAGCTGAAAGCAAGAAACCTAAAT
GG
GTCCCACCAGCGGCATCTGGAGGTAGCAGAAGTAGCAGCAGCCCACTGGTGGTAGTGTCTGTGAAGTC
T
CCCAATCAGAGTCTCCGCCTTGGCTTGTCCAGATTAGCACGAGTTAAACCTTTGCATCCAAATGCCACT
AGC
ACCTGA


Translation (352 aa):
MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEIPVQEKTPKKR
L
PEGTFSIPASAVPCT
KMALDDKLYQRDLEVALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMNKSP
H
ISNCSVASDYL
DLDKITVEDDVGGVQGKRKAASKAAAQQRKILLEGSDGDSANDTEPDFAPGEDSEDDS
D
FCESEDNDEDFSMRKSKVKEIKKKEVKVKSPVEKKEKKSKSKCNAL
VTSVDSAPAAVKSESQSLPKKVS
L
SSDTTRKPLEIRSPSAESKKPKWVPP
AASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNAT
S
T




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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