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Report for CCDS45859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45859.1 Public Homo sapiens 18 SETBP1 24 110 108 CCDS HistoryNCBI Gene:26040Re-query CCDS DB by CCDS ID:45859.1Re-query CCDS DB by GeneID:26040See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426838.8 ENSP00000390687.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426838.8Link to Ensembl Protein Viewer:ENSP00000390687.3Re-query CCDS DB by Nucleotide ID:ENST00000426838Re-query CCDS DB by Protein ID:ENSP00000390687
Original member Current member NCBI NM_001130110.2 NP_001123582.1 Accepted alive Link to Nucleotide Sequence:NM_001130110.2Link to Protein Sequence:NP_001123582.1Re-query CCDS DB by Nucleotide ID:NM_001130110Re-query CCDS DB by Protein ID:NP_001123582Link to BLAST:NP_001123582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123582.1 242 Q9Y6X0-2 242 100% 0 0

Chromosomal Locations for CCDS 45859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44701347 44701832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44869230 44869283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44876565 44876753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGAGTCCAGGGAAACCTTAAGCAGCTCCCGGCAAAGAGGGGGCGAGTCAGACTTCCTGCCGGTCTCCT
CAGCCAAGCCCCCAGCTGCTCCTGGCTGTGCAGGAGAACCTTTGCTCTCCACTCCAGGACCTGGGAAGGG
GATCCCGGTGGGCGGAGAGCGCATGGAGCCAGAGGAGGAGGATGAACTAGGCTCAGGGCGGGATGTGGAT
TCCAACTCCAACGCGGACAGTGAGAAATGGGTGGCAGGAGATGGTTTGGAAGAGCAGGAATTTTCTATCA
AGGAGGCAAACTTCACAGAGGGAAGTCTGAAGCTAAAGATTCAGACCACAAAGCGGGCTAAGAAACCCCC
AAAGAATTTGGAGAACTATATATGTCCACCTGAGATCAAGATCACCATCAAGCAGTCTGGGGACCAGAAG
GTGTCCCGTGCTGGAAAAAATAGCAAAGCCACGAAGGAGGAAGAAAGAAGCCACTCCAAAAAGAAGCTCC
TCACAGCCAGTGACCTTGCAGCCAGTGACCTCAAAGGATTTCAGCCACAGATTAAAGACTCCAGTAAGGA
GGAAGTCTGGAAGAGAAGAGGAGGCCAAGGCATCCCATTCAAAAAGCAATTCCTGTCCCAGGAACGTGCC
ATGTGCTTCTCATGCCCCCGGAACCCATTCCCCGCAAAACCCGGTTCTCTCACTCTTCCTTTTCACAGTG
AACCTGCAGTCTGGGCACAAGAAGTATAA

Translation (242 aa):
MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVD
SNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQK
VSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKRRGGQGIPFKKQFLSQERA
MCFSCPRNPFPAKPGSLTLPFHSEPAVWAQEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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