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Report for CCDS47139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47139.1 Public Homo sapiens 4 OTUD4 24 110 108 CCDS HistoryNCBI Gene:54726Re-query CCDS DB by CCDS ID:47139.1Re-query CCDS DB by GeneID:54726See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454497.6 ENSP00000409279.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454497.6Link to Ensembl Protein Viewer:ENSP00000409279.2Re-query CCDS DB by Nucleotide ID:ENST00000454497Re-query CCDS DB by Protein ID:ENSP00000409279
Original member Current member NCBI NM_001102653.1 NP_001096123.1 Accepted alive Link to Nucleotide Sequence:NM_001102653.1Link to Protein Sequence:NP_001096123.1Re-query CCDS DB by Nucleotide ID:NM_001102653Re-query CCDS DB by Protein ID:NP_001096123Link to BLAST:NP_001096123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096123.1 1049 Q01804-3 1049 100% 0 0

Chromosomal Locations for CCDS 47139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145137430 145138650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145139951 145139991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145141379 145141639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145142196 145142334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145143365 145143445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145143946 145144001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145144311 145144434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145146267 145146429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145150513 145150699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145150802 145150905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145152541 145152635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145155411 145155475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145155569 145155686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145155936 145155996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145159503 145159635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145162640 145162721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145164154 145164226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145165151 145165197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145171670 145171720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145174661 145174708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3150 nt):
ATGGCCTGTATTCACTATCTTCGAGAGAACAGAGAGAAATTTGAAGCGTTTATAGAAGGATCATTTGAAG
AATATTTAAAGCGTTTGGAAAATCCACAGGAATGGGTAGGACAAGTGGAAATAAGTGCCCTTTCTCTTAT
GTACAGGAAAGATTTTATAATTTATCGGGAACCAAATGTTTCTCCTTCACAAGTAACAGAAAATAATTTT
CCTGAAAAGGTGTTACTGTGTTTTTCAAATGGAAATCATTATGATATTGTGTATCCCATAAAGTATAAAG
AAAGCTCTGCTATGTGTCAGTCTCTCCTTTATGAATTGCTGTATGAGAAGGTATTTAAAACTGATGTTAG
TAAAATTGTGATGGAACTAGACACGTTGGAAGTAGCTGATGAAGATAACAGTGAAATATCAGATTCAGAG
GATGACAGTTGCAAGAGTAAGACTGCTGCTGCTGCTGCTGATGTGAATGGATTTAAACCTTTGTCAGGCA
ATGAGCAGCTGAAGAACAATGGGAACTCTACTAGCCTGCCTTTGTCTAGAAAGGTTCTTAAGTCACTCAA
TCCTGCAGTCTATAGAAATGTGGAATATGAAATTTGGCTGAAGTCTAAACAAGCTCAGCAAAAACGTGAT
TATTCCATTGCTGCTGGCTTACAATATGAAGTTGGAGACAAATGTCAAGTTAGGTTGGATCACAATGGAA
AATTTTTGAATGCAGATGTTCAAGGAATTCATTCTGAGAATGGACCAGTTTTGGTTGAAGAACTGGGAAA
GAAGCACACATCAAAGAACCTCAAGGCACCTCCCCCAGAAAGCTGGAACACAGTGTCAGGGAAGAAGATG
AAAAAACCTTCCACTTCTGGACAAAATTTCCATTCTGATGTGGATTACAGAGGGCCAAAGAATCCAAGCA
AGCCAATAAAAGCCCCATCAGCACTACCTCCTCGACTGCAGCATCCTTCAGGAGTAAGACAACATGCGTT
CTCTAGTCATTCTTCAGGGTCACAGTCTCAGAAATTCTCCAGTGAGCACAAAAATCTTAGCCGGACACCT
TCACAGATCATAAGAAAACCTGATCGTGAAAGAGTTGAGGATTTTGATCACACAAGTCGAGAATCTAACT
ATTTCGGCCTTTCCCCAGAAGAGCGCAGAGAGAAGCAAGCTATAGAAGAATCCCGTTTACTCTATGAGAT
TCAGAACAGAGATGAACAGGCTTTCCCAGCCCTTTCCAGCTCATCAGTCAATCAGTCAGCTTCTCAGAGT
AGCAATCCATGTGTCCAGAGAAAATCATCACATGTAGGTGATAGAAAAGGAAGCAGGCGGAGAATGGATA
CAGAAGAACGAAAAGACAAAGACTCTATTCATGGACATAGTCAGTTGGATAAAAGACCCGAACCAAGCAC
ATTGGAGAATATTACTGATGATAAATATGCAACAGTTTCATCACCATCAAAGTCAAAGAAGTTAGAGTGC
CCTTCTCCTGCGGAACAAAAGCCAGCAGAACATGTGTCTTTGTCAAATCCAGCTCCCCTTCTAGTTTCTC
CAGAGGTACATCTAACTCCTGCGGTGCCTTCTTTACCAGCCACTGTGCCAGCCTGGCCAAGTGAACCTAC
AACTTTTGGACCAACAGGTGTCCCTGCTCCAATTCCCGTTTTGTCAGTGACACAGACTTTGACCACTGGA
CCTGATTCAGCTGTATCCCAAGCTCATTTAACACCCTCTCCAGTTCCTGTGTCAATACAGGCAGTTAACC
AGCCCTTGATGCCTTTGCCTCAGACATTGAGCCTTTATCAAGACCCACTCTATCCTGGGTTTCCTTGTAA
TGAAAAGGGAGATCGAGCCATTGTACCACCTTATTCACTGTGTCAGACTGGGGAGGACCTACCTAAAGAT
AAGAATATTCTTCGATTCTTCTTCAATCTTGGTGTGAAGGCATACAGTTGTCCTATGTGGGCCCCACATT
CTTACCTGTACCCTCTGCACCAGGCCTACCTGGCAGCCTGCAGGATGTACCCAAAGGTCCCTGTCCCTGT
TTATCCTCATAATCCCTGGTTCCAAGAGGCTCCTGCTGCTCAGAATGAAAGTGATTGTACCTGTACTGAT
GCCCACTTTCCTATGCAGACTGAGGCCAGTGTTAATGGTCAAATGCCACAGCCAGAGATTGGACCGCCGA
CATTTTCTTCACCTCTGGTTATCCCTCCATCTCAGGTGTCTGAAAGTCATGGACAATTGTCTTACCAGGC
TGATCTTGAATCTGAGACCCCTGGGCAGCTTCTGCATGCTGATTATGAAGAGTCACTAAGTGGCAAGAAT
ATGTTCCCCCAGCCATCTTTTGGACCCAATCCATTCTTAGGCCCAGTTCCTATTGCACCTCCTTTCTTTC
CTCATGTTTGGTATGGGTACCCTTTTCAGGGATTCATAGAAAATCCAGTAATGAGGCAGAATATTGTCCT
GCCCTCTGATGAAAAAGGAGAATTGGATCTGTCTCTGGAAAATCTGGATCTGTCTAAAGATTGTGGTTCA
GTTTCAACAGTAGATGAGTTTCCAGAAGCCAGGGGTGAACATGTACATTCTCTCCCTGAAGCAAGTGTGA
GCAGTAAGCCGGACGAAGGCCGGACAGAGCAATCTTCCCAGACACGAAAGGCAGATACGGCATTGGCTTC
CATCCCTCCTGTAGCAGAGGGAAAGGCTCATCCTCCCACTCAGATTCTAAACAGAGAGAGAGAAACTGTG
CCTGTTGAACTTGAACCTAAAAGGACCATTCAAAGCCTGAAAGAAAAAACAGAAAAAGTAAAAGATCCTA
AGACTGCTGCTGATGTGGTCAGCCCTGGGGCCAACTCTGTTGATAGCAGAGTGCAAAGACCAAAAGAAGA
GAGTTCAGAAGATGAAAATGAAGTGTCTAATATTTTGAGAAGTGGTAGATCCAAGCAGTTCTATAATCAA
ACTTATGGAAGCAGGAAGTACAAAAGTGATTGGGGCTATTCTGGTAGGGGTGGATATCAACATGTGAGAA
GTGAGGAGTCCTGGAAAGGACAGCCAAGCAGAAGTCGGGATGAAGGTTATCAGTACCATCGAAATGTCAG
AGGGCGACCATTTAGGGGAGATAGGAGGAGATCAGGGATGGGAGATGGCCATAGGGGACAGCACACTTGA

Translation (1049 aa):
MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNF
PEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSE
DDSCKSKTAAAAADVNGFKPLSGNEQLKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRD
YSIAAGLQYEVGDKCQVRLDHNGKFLNADVQGIHSENGPVLVEELGKKHTSKNLKAPPPESWNTVSGKKM
KKPSTSGQNFHSDVDYRGPKNPSKPIKAPSALPPRLQHPSGVRQHAFSSHSSGSQSQKFSSEHKNLSRTP
SQIIRKPDRERVEDFDHTSRESNYFGLSPEERREKQAIEESRLLYEIQNRDEQAFPALSSSSVNQSASQS
SNPCVQRKSSHVGDRKGSRRRMDTEERKDKDSIHGHSQLDKRPEPSTLENITDDKYATVSSPSKSKKLEC
PSPAEQKPAEHVSLSNPAPLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPTGVPAPIPVLSVTQTLTTG
PDSAVSQAHLTPSPVPVSIQAVNQPLMPLPQTLSLYQDPLYPGFPCNEKGDRAIVPPYSLCQTGEDLPKD
KNILRFFFNLGVKAYSCPMWAPHSYLYPLHQAYLAACRMYPKVPVPVYPHNPWFQEAPAAQNESDCTCTD
AHFPMQTEASVNGQMPQPEIGPPTFSSPLVIPPSQVSESHGQLSYQADLESETPGQLLHADYEESLSGKN
MFPQPSFGPNPFLGPVPIAPPFFPHVWYGYPFQGFIENPVMRQNIVLPSDEKGELDLSLENLDLSKDCGS
VSTVDEFPEARGEHVHSLPEASVSSKPDEGRTEQSSQTRKADTALASIPPVAEGKAHPPTQILNRERETV
PVELEPKRTIQSLKEKTEKVKDPKTAADVVSPGANSVDSRVQRPKEESSEDENEVSNILRSGRSKQFYNQ
TYGSRKYKSDWGYSGRGGYQHVRSEESWKGQPSRSRDEGYQYHRNVRGRPFRGDRRRSGMGDGHRGQHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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