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Report for CCDS47518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47518.1 Public Homo sapiens 6 FRMD1 24 110 108 CCDS HistoryNCBI Gene:79981Re-query CCDS DB by CCDS ID:47518.1Re-query CCDS DB by GeneID:79981See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440994.6 ENSP00000414115.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440994.6Link to Ensembl Protein Viewer:ENSP00000414115.2Re-query CCDS DB by Nucleotide ID:ENST00000440994Re-query CCDS DB by Protein ID:ENSP00000414115
Original member Current member NCBI NM_001122841.3 NP_001116313.1 Accepted alive Link to Nucleotide Sequence:NM_001122841.3Link to Protein Sequence:NP_001116313.1Re-query CCDS DB by Nucleotide ID:NM_001122841Re-query CCDS DB by Protein ID:NP_001116313Link to BLAST:NP_001116313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116313.1 481 Q8N878-2 481 100% 0 0

Chromosomal Locations for CCDS 47518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 168057097 168057339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168059124 168059188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168060761 168061057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168061807 168061981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168062894 168062959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168063601 168063756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168064871 168065057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168066755 168066831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168067367 168067446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168075245 168075335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168075739 168075747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGATGATGTGAAGGCTACTGGCCGCGAGCTTTTCCAGCAAGTGTGCAACGTGGCGAGCATCAGAGACG
CG
CAGTTCTTTGGCCTCTGTGTGGTCAGAAACAATGAGTATATATTTATGGATTTGGAGCAAAAGCTCAG
C
AAGTACTTCTCAAAAGATTGGAAGAAAGAAAGAAATGAAGGAAATGAGAAACCCAGAGCCCCCTTCGTG
GCC
TTCCTCCGAGTGCAGCACTACGTGGAAAACGGAAGGGTCATAAGCGACCACAGGGCACGGCACCTGT
AC
TACTGCCACTTGAAGGAGCGCGTGCTGAGGTCACAGTGCGCTCACCGGGAGGAAGCCTACTTCCTGCT
G
GCTGCCTGCGCGCTGCAGGCTGACCTGGGCGAGCACCGGGAGTCGGCCCATGCCGGGAGGTACTTCGAG
CCA
CACTCCTACTTCCCACAGTGGATCATCACCAAGAGGGGGATTGACTACATCCTCCGGCACATGCCTA
CC
CTGCACCGTGAGCGCCAGGGCCTGAGCCCCAAGGAGGCCATGCTGTGCTTCATCCAGGAGGCCTGCCG
G
CTGGAGGACGTGCCCGTGCACTTCTTCAGGCTGCACAAGGATAAGAAGGAAGGTCGTCCCACCGTGATC
CTG
GGACTGGCCCTCAGGGGAGTGCACATCTACCAGGGAAAGAAGCTGGAGATCCAGCTGGATGGGCTGC
CC
GCAGCACAGAAGCTGGTTTACTACACGGGGTGCACCTGGCGGTCCAGGCACCTGCTGCACCTGCTGCG
C
GCCAGCCACCAGCTCCACCTCCGCGTGCGGCCCACTCTGCAACAGCTGCGGCAGCGGGAGGAGGCAGAA
G
AG
AAGCAGCACTACCGGGAGTCCTATATCAGCGATGAGCTGGAGCTGGACCTGGCCAGCAGGAGCTTCC
CG
GGCAGTGGGGTCAGCAGCCAGCACTGCCCCCACTGCCTCTCACGCCACTCCGCCGACAGCCACGGCAG
T
TCCTACACGTCAGGCATCAAGGCCAACTCCTGGCTCAGGGAATCCAGAGAGATGTCTGTGGACGTGCCC
TTG
GAGGTCCACGGGCTCCATGAGAAGGAGCCGTCCTCCAGCCCCAGGACCAGCCGCAGCCACCCCAGCA
CA
CGTGGTGACAGCCAAGCCACTCGTCAGGAGCCCTGCACCCAGGTCAGGACCAGAGGCCAGAGCGCCGA
G
GCCGTGCACCAGATCCAGGAAATGACAGCCGGGGTCAGTGAGGAGCAGCACAGCCATGGCCTGGACGAC
ATG
CAGCTGCACCAGCTGGCCCTGCACCCAGCGCCCACCTCACTCAGCCATACCTTCCACCGCGCCCTGG
AC
TGCAGGCTGGCAGGCCCCTGCGAGACCAGGGCCACTCTCCCCAGCAAGAGGTCCAGCAACTGTCTCGC
C
CTGGACCTGTTCGGAGAGGCTCCACCACAGGAGTTTGTGGTGTAG


Translation (481 aa):
MDDVKATGRELFQQVCNVASIRDAQFFGLCVVRNNEYIFMDLEQKLSKYFSKDWKKERNEGNEKPRAPFV
A
FLRVQHYVENGRVI
SDHRARHLYYCHLKERVLRSQCAHREEAYFLLAACALQADLGEHRESAHAGRYFE
P
HSYFPQW
IITKRGIDYILRHMPTLHRERQGLSPKEAMLCFIQEACRLEDVPVHFFRLHKDKKEGRPTVI
L
GLALRGVHIYQ
GKKLEIQLDGLPAAQKLVYYTGCTWRSRHLLHLLRASHQLHLRVRPTLQQLRQREEAE
E
KQHYRESYISDELELDLASRSFPGSGVSSQHCPHCLSRHSADSHGSSYTSGIKANSWLRESREMSVDVP
L
EVHGLHEKEPSSSPRTSRSHPSTRGDSQ
ATRQEPCTQVRTRGQSAEAVHQIQEMTAGVSEEQHSHGLDD
M
QLHQLALHPAPTSLSHTFHRALDCRLAGPCETRATLPSKRSSNCLALDLFGEAPPQEFVV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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