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Report for CCDS47836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47836.1 Public Homo sapiens 8 NRG1 24 110 108 CCDS HistoryNCBI Gene:3084Re-query CCDS DB by CCDS ID:47836.1Re-query CCDS DB by GeneID:3084See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47836.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520407.5 ENSP00000434640.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520407.5Link to Ensembl Protein Viewer:ENSP00000434640.1Re-query CCDS DB by Nucleotide ID:ENST00000520407Re-query CCDS DB by Protein ID:ENSP00000434640
Original member Current member NCBI NM_013962.3 NP_039256.2 Accepted alive Link to Nucleotide Sequence:NM_013962.3Link to Protein Sequence:NP_039256.2Re-query CCDS DB by Nucleotide ID:NM_013962Re-query CCDS DB by Protein ID:NP_039256Link to BLAST:NP_039256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_039256.2 422 Q02297-9 422 100% 0 0

Chromosomal Locations for CCDS 47836.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31639985 31640729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32595828 32596005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32605562 32605683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32727949 32728078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32742675 32742768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGAGATGGCGACGCGCCCCGCGCCGCTCCGGGCGTCCCGGCCCCCGGGCCCAGCGCCCCGGCTCCGCCG
CCCGCTCGTCGCCGCCGCTGCCGCTGCTGCCACTACTGCTGCTGCTGGGGACCGCGGCCCTGGCGCCGGG
GGCGGCGGCCGGCAACGAGGCGGCTCCCGCGGGGGCCTCGGTGTGCTACTCGTCCCCGCCCAGCGTGGGA
TCGGTGCAGGAGCTAGCTCAGCGCGCCGCGGTGGTGATCGAGGGAAAGGTGCACCCGCAGCGGCGGCAGC
AGGGGGCACTCGACAGGAAGGCGGCGGCGGCGGCGGGCGAGGCAGGGGCGTGGGGCGGCGATCGCGAGCC
GCCAGCCGCGGGCCCACGGGCGCTGGGGCCGCCCGCCGAGGAGCCGCTGCTCGCCGCCAACGGGACCGTG
CCCTCTTGGCCCACCGCCCCGGTGCCCAGCGCCGGCGAGCCCGGGGAGGAGGCGCCCTATCTGGTGAAGG
TGCACCAGGTGTGGGCGGTGAAAGCCGGGGGCTTGAAGAAGGACTCGCTGCTCACCGTGCGCCTGGGGAC
CTGGGGCCACCCCGCCTTCCCCTCCTGCGGGAGGCTCAAGGAGGACAGCAGGTACATCTTCTTCATGGAG
CCCGACGCCAACAGCACCAGCCGCGCGCCGGCCGCCTTCCGAGCCTCTTTCCCCCCTCTGGAGACGGGCC
GGAACCTCAAGAAGGAGGTCAGCCGGGTGCTGTGCAAGCGGTGCGCCTTGCCTCCCCGATTGAAAGAGAT
GAAAAGCCAGGAATCGGCTGCAGGTTCCAAACTAGTCCTTCGGTGTGAAACCAGTTCTGAATACTCCTCT
CTCAGATTCAAGTGGTTCAAGAATGGGAATGAATTGAATCGAAAAAACAAACCACAAAATATCAAGATAC
AAAAAAAGCCAGGGAAGTCAGAACTTCGCATTAACAAAGCATCACTGGCTGATTCTGGAGAGTATATGTG
CAAAGTGATCAGCAAATTAGGAAATGACAGTGCCTCTGCCAATATCACCATCGTGGAATCAAACGCTACA
TCTACATCCACCACTGGGACAAGCCATCTTGTAAAATGTGCGGAGAAGGAGAAAACTTTCTGTGTGAATG
GAGGGGAGTGCTTCATGGTGAAAGACCTTTCAAACCCCTCGAGATACTTGTGCAAGTGCCCAAATGAGTT
TACTGGTGATCGCTGCCAAAACTACGTAATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTG
CCTGAATAG

Translation (422 aa):
MRWRRAPRRSGRPGPRAQRPGSAARSSPPLPLLPLLLLLGTAALAPGAAAGNEAAPAGASVCYSSPPSVG
SVQELAQRAAVVIEGKVHPQRRQQGALDRKAAAAAGEAGAWGGDREPPAAGPRALGPPAEEPLLAANGTV
PSWPTAPVPSAGEPGEEAPYLVKVHQVWAVKAGGLKKDSLLTVRLGTWGHPAFPSCGRLKEDSRYIFFME
PDANSTSRAPAAFRASFPPLETGRNLKKEVSRVLCKRCALPPRLKEMKSQESAAGSKLVLRCETSSEYSS
LRFKWFKNGNELNRKNKPQNIKIQKKPGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVESNAT
STSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVMASFYSTSTPFLSL
PE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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