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Report for CCDS48242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48242.1 Public Mus musculus 1 Cracdl 23 108 98 CCDS HistoryNCBI Gene:72097Re-query CCDS DB by CCDS ID:48242.1Re-query CCDS DB by GeneID:72097See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162875.7 ENSMUSP00000123803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162875.7Link to Ensembl Protein Viewer:ENSMUSP00000123803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162875Re-query CCDS DB by Protein ID:ENSMUSP00000123803
Original member NCBI NM_028096.1 NP_082372.1 Updated not alive Link to Nucleotide Sequence:NM_028096.1Link to Protein Sequence:NP_082372.1Re-query CCDS DB by Nucleotide ID:NM_028096Re-query CCDS DB by Protein ID:NP_082372
Current member NCBI NM_028096.2 NP_082372.1 Accepted alive Link to Nucleotide Sequence:NM_028096.2Link to Protein Sequence:NP_082372.1Re-query CCDS DB by Nucleotide ID:NM_028096Re-query CCDS DB by Protein ID:NP_082372Link to BLAST:NP_082372.1

Chromosomal Locations for CCDS 48242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37612257 37612396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37613337 37613481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37614481 37614668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37623761 37626068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37628217 37628426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37631321 37631482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37631816 37631951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37637861 37638029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37644561 37644630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGATTTCCACGAGGGTGATGGACATTAAACTTCGGGAGGCTGCCGAAGGCCTTGGGGAAGATGGTGCAG
GA
AAGAAAAAGTCGAAATTTAAAACTTTTAAGAAGCTGTTTGGGAAGAAGAAGAGAAAGGAATCCCCCTC
A
CCCACAGGAAACAGCGCCTGGAAGCAAAATCCGGCCAAGAGCGAGGTCATTGCCGTTGAGGAGTCGGGG
CCC
GTGTATGACTCTGAAGATGAGCTGGAGGAGTCCAGGGGTACTATGGGCAGCCGGGCCCTCTCCCACG
AC
AGTATTTTCTTTCCTGAATCGGGACAGGACCCTGCTCGGCCCGTGCGGGTGTTCTCCCAAGAAAATGT
G
TGCGACCGGATCAAGGCTTTGCAGTTAAAGATACAATGTAACGTGAAGATGGGGCCACCGCCTCCAGGA
GGC
CTTCCTATCAAGCGGGCAGAGGAAACCGGCATGAGTTCTGAGGATGACGGACTGCCCCGCAGCCCCC
CA
GAGATGTCCCTGCTGCACGATGTGGGTCCAGGCACAACTATAAAGATCCTAGTGTCCTCGTCCCGGCC
A
CAGTCTCCCGACCACATGAGCGATGCCTCCATCTCGTCTCGGACCTTGGATGGTAGCCTAGCTCCTGTG
GTT
GACTTCAGCCACCCTCCAGAATTCTCTTCCTGCCTGGACAACTCTGCAGCTAAACACAAACTCCTGG
TG
AAGCCCCGCAACCAGCGATCAAGTAAACTGAGGCGGCTGTCTTCGAGGGCGCAGTCTGAGTGCCTGAG
T
GACCTGTCGTGGACCCTAGATGAGGAAGACTATGAGGAGAAGCCATTGCTTCATGTCAGCATGGAAGAA
ACC
CCGGACGCTAGGCAGCGGGATTTGATACCAGGCAGAAGGCCTGAGTTTGGGGGACCTGCAACCTTTC
TG
TCACCTGGGGGGGCCTGTGCCAGGCGTGCTCGCCTACAGCACAGCATGGCAGTCAGTGCCAGCATGGA
G
GAGGGAGGCTGTCCTAGAGATGAACCCTCAAGCCTTCCAGCTACGCCAGAAGTTACTGAGCCCATGGTG
GTC
TCAGTCCCAAGCTTGGAGTCCCCATCTCTGCCAGAAAGTTCTCCAAACCATATTCTCCATAGTAAGA
GC
CAGAAGGAAGAGCTGTCCCCTGGAGGCCTGTGTCCCCTAGTGGAGAGTACATCAGAGGAGGCTCCTTG
T
GGTTCTGGAGTTGCAGAAACCCCTCTATCTACTGATGTCCCTGAGAGGGACATGGGACCTTCCAAGGAG
GGC
TCTGCACCTCCTGAGGGAGACCCAGCATTTTCTGAAAGACACATGGCATTCCCTGGAGGGGGTAGCA
TA
CCTCCTGAAGGAAACACAACACCTCACAAGGGTGTCATGGAACCTCCCGAGAGAGACATGTCACCTTC
C
AAGGACAACATGGCACCTCCCAAGAGGATCATAGCACCTCCAGAGAGAGACATGTTACCTTCTGAGGGA
GAT
GTGGCACCTCCCAAGAGGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGG
CA
CCTCCCAAGAAGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGGCACCTCC
C
AAGAAGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGGCACCTCCCAAGAAG
ATC
ATGGCACCCCCAGAGAGAGACATGTCACCTTCCGAGGGAGATGTGGCACCTCCCAAGAAGATCATGG
CA
CCCCCAGAGAGAGACATGTCACCTCCCGAAGGAGATGTGGCACCTCCCAAGAAGATCATGGCACCCCC
A
GAAAGAGACTTGTCACCTTCTGAGGGAGATGTGGCACCTCCCAAGAGGATCATGGCACCCCCAGAGAGG
GAC
ATGTCACCTTTCAAGGGTGACATGGCACCACCCAAAGGAATCATGGAGCCTCCTAATAGGGACACAT
CA
CTTCCAAAGGGAGACACACCACCTCCTGAGACTATCACTGATACCAACTTGGAGACACCTTCAGATAC
A
GAGAGACAGGACCAAAGTGTCCAGAAGGAAGAGGAGCTGACCCTGGTGGTGGTACCCAGGCCTGAGGGA
GTG
GGGACAGAGTCTTCCACAGCCCCTGCCCCAAGCCCTCCAGTACCCAAGAGCTGCCTGAAGCACAAGG
CC
TTGGTCACCAGTGGGTCCCCTGCAGAGTCTCCTCTGAAAGAGCCTGGCCCAGCAGTCCAAGACAAAGC
A
GTTGTGCCTCCCGCCCGCCCCAGGCCTACACAGGCTGCAACCTCAGGAGGTCCAGAGAGAACAGCCCTG
GGG
AGAAAGAACGAGCGGAGTGCAGAGCCACAGCGCAGCAGCGTTAAGAGGTTTTCTGTGACCTCCAGCA
GG
GCACGTGCCCGTGTCAGCGGCTCTCGCCTTCCGGAGTATTCTGCACATGTGCCTGCAGGGGGCCGAGC
A
CCCTTGCTGCGGAGTGGCCTTGCCTGGAAGAGTGAGGCAGCACTTGACGACCTTCAGGTGCTGCCAAAG
CCA
CAGGACCGGAAGACAATGGGTGGTGACCCTCAAAACTCAGGGGATGTGGGGGCCGGCCAGGCAGGAC
CG
GGCAAGAGCCCCCAGGAAGCTGAGCCATGTGCCTCCTCTGTGCAGGAGCCAGCCAATGGGGAGGACCA
G
AGCCCCTTCCCAGTCAAGCTGCGGTCCACCTCACTCTCACTTAAATACAGAGACAGCTCTGCCCAAGAG
GCC
AAAGCCATCAAGAGGTACAGCGCCGAAGTCAGGTTGGAGAAAGGAGGCCTGGCTCTGCTTCCCAAAG
AT
GAACAGAGCCACGTCGGGGCAGCTCCTGCACTGCGAGGCTCCAGGTCCCCCAACGGGCAAGGGAAAGG
A
AAGACCAGGTCTCCTGAGCAGCCAGGTACCAAGCCACCCCTGCCCAGGAAGCCACTTCTGCCGAGCCTT
ACC
TTGCCATACCCACCCACAGGCCTGGATACCAGCCCTGGGGAGTCTGAGAGACTCATACCGGTCATCC
TG
CCTCCCGAGCCCAGGAAGGAGAAATTGTCCAATCAGGGAGCTGAAAAGGGTCAGCCTCCTGCGGCTAC
A
GGTCCTGGGGCTGATGGGCAACCCACCCCACCCTGGATCACCATGGCCCGGCAGAAGAGAAGAGGAGCC
CCA
GACCTGCCCGTCAACCAGGAAGAGAAACCTGGGTCGAGGATCCTAAAGACAGAAACTGGGAAGCAAG
CC
AAGGTGGCCGAGAGAGCCCAGGAGTCTGTGAAGCAGGGTGACTTCGTCCGGAGCAAATCTTTCCTGAT
G
ACCCCTGCAAAGCCTGCTGTGACCCAGAGGCAGGGGTCAAAACTGAACCTCAAGGAAGGGCTACAGAGA
GGA
ATCTCACTGTCCCATCAGAACTTGGCTCAGGCTGCAGCGACCACAGAGAAGGAACTTCATCAGCTGA
AG
AGGGCCAGTTACGCCAGTACAGATCAGCCATCCTGGATGGAACTCGCCAGAAAGAAATCTCAAGCCTG
G
AGCGACATGCCCCAAATCATAAAATAG


Translation (1175 aa):
MISTRVMDIKLREAAEGLGEDGAGKKKSKFKTFKKLFGKKKRKESPSPTGNSAWKQNPAKSEVIAVEESG
P
VYDSEDEL
EESRGTMGSRALSHDSIFFPESGQDPARPVRVFSQENVCDRIKALQLKIQCNVKMGPPPPG
G
LPIKRAEETGMSSEDDGLPRSPPEMSLLHDVGPGTTIK
ILVSSSRPQSPDHMSDASISSRTLDGSLAPV
V
DFSHPPEFSSCLDNSAAKHKLLVKPRNQRSSKLRRLSS
RAQSECLSDLSWTLDEEDYEEKPLLHVSMEE
T
PDARQRDLIPGRRPEFGGPATFLSPGGACARRARLQHSMAVSASMEEGGCPRDEPSSLPATPEVTEPMV
V
SVPSLESPSLPESSPNHILHSKSQKEELSPGGLCPLVESTSEEAPCGSGVAETPLSTDVPERDMGPSKE
G
SAPPEGDPAFSERHMAFPGGGSIPPEGNTTPHKGVMEPPERDMSPSKDNMAPPKRIIAPPERDMLPSEG
D
VAPPKRIMAPPERDMSPPEGDVAPPKKIMAPPERDMSPPEGDVAPPKKIMAPPERDMSPPEGDVAPPKK
I
MAPPERDMSPSEGDVAPPKKIMAPPERDMSPPEGDVAPPKKIMAPPERDLSPSEGDVAPPKRIMAPPER
D
MSPFKGDMAPPKGIMEPPNRDTSLPKGDTPPPETITDTNLETPSDTERQDQSVQKEEELTLVVVPRPEG
V
GTESSTAPAPSPPVPKSCLKHKALVTSGSPAESPLKEPGPAVQDKAVVPPARPRPTQAATSGGPERTAL
G
RKNERSAEPQRSSVKRFSVTSSRARARVSGSRLPEYSAHVPAGGRAPLLRSGLAWKSEAALDDLQVLPK
P
QDRKTMGGDPQNSGDVGAGQAGPGKSPQEAEPCASSVQEPANGEDQSPFPVKLRSTSLSLKYRDSSAQE
A
KAIKRYSAEVRLEKGGLALLPKDEQSHVGAAPALRGSRSPNGQGKGKTRSPEQPGTKPPLPRKPLLPSL
T
LPYPPTGLDTSPGESERLIPVILPPEPRKEKLSNQGA
EKGQPPAATGPGADGQPTPPWITMARQKRRGA
P
DLPVNQEEKPGSRILKTETGKQAKVAERAQ
ESVKQGDFVRSKSFLMTPAKPAVTQRQGSKLNLKEGLQR
G
ISLSHQNL
AQAAATTEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQIIK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser