NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48308.1 Under review, update Mus musculus 1 Neu2 23 108 98 CCDS HistoryNCBI Gene:23956Re-query CCDS DB by CCDS ID:48308.1Re-query CCDS DB by GeneID:23956See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172222.7 ENSMUSP00000131409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172222.7Link to Ensembl Protein Viewer:ENSMUSP00000131409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172222Re-query CCDS DB by Protein ID:ENSMUSP00000131409
Original member NCBI NM_001160163.1 NP_001153635.1 Updated not alive Link to Nucleotide Sequence:NM_001160163.1Link to Protein Sequence:NP_001153635.1Re-query CCDS DB by Nucleotide ID:NM_001160163Re-query CCDS DB by Protein ID:NP_001153635
Current member NCBI NM_001160163.2 NP_001153635.2 Pending alive Link to Nucleotide Sequence:NM_001160163.2Link to Protein Sequence:NP_001153635.2Re-query CCDS DB by Nucleotide ID:NM_001160163Re-query CCDS DB by Protein ID:NP_001153635Link to BLAST:NP_001153635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153635.2 379 Q9JMH3 379 100% 0 0

Chromosomal Locations for CCDS 48308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87579505 87579535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87594878 87595089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87596538 87597476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGACAGTCCAACCTTCTCCATGGTTTTCCGATCTCAGGCCCATGGCGACCTGCCCTGTCCTGCAGAAGG
AGACACTGTTCCGCACAGGCGTCCATGCTTACAGAATCCCTGCTCTGCTCTACCTGAAGAAGCAGAAGAC
CCTGCTGGCCTTTGCGGAAAAGCGAGCCAGCAAGACGGATGAGCACGCAGAGTTGATTGTCCTGAGAAGA
GGAAGCTACAACGAAGCCACCAACCGTGTCAAGTGGCAGCCTGAGGAAGTGGTGACCCAAGCCCAGCTGG
AAGGCCACCGCTCCATGAATCCATGTCCCTTGTATGACAAGCAAACAAAGACCCTCTTCCTTTTCTTCAT
CGCTGTCCCTGGGCGTGTATCAGAACATCATCAGCTCCACACTAAGGTTAATGTCACACGGCTGTGCTGT
GTCAGCAGCACTGACCATGGGAGGACCTGGAGCCCCATCCAGGACCTCACAGAGACCACCATTGGCAGCA
CTCATCAGGAATGGGCCACATTTGCTGTGGGTCCTGGGCATTGTCTGCAGCTGCGGAACCCAGCTGGGAG
CCTGCTGGTACCTGCTTATGCCTACCGGAAACTGCACCCTGCTCAGAAGCCTACCCCCTTTGCCTTCTGC
TTCATCAGCCTTGACCATGGGCACACATGGAAACTAGGCAACTTTGTGGCTGAAAACTCACTGGAGTGCC
AGGTGGCTGAGGTTGGCACTGGAGCTCAGAGGATGGTATATCTCAATGCTAGGAGCTTCCTGGGAGCCAG
GGTCCAGGCACAAAGTCCTAATGATGGTCTGGATTTCCAGGACAACCGGGTAGTGAGTAAGCTTGTAGAG
CCCCCCCACGGGTGTCATGGAAGTGTGGTTGCCTTCCACAACCCCATCTCTAAGCCACATGCCTTAGACA
CATGGCTTCTTTATACACACCCTACAGACTCCAGGAATAGAACCAACCTGGGTGTGTACCTAAACCAGAT
GCCACTAGATCCCACAGCCTGGTCAGAGCCCACCCTGCTGGCCATGGGCATCTGTGCCTACTCAGACTTA
CAGAACATGGGGCAAGGCCCTGATGGCTCCCCACAGTTTGGGTGTCTGTATGAATCAGGTAACTATGAAG
AGATCATTTTCCTCATATTCACCCTGAAGCAAGCTTTCCCCACTGTATTTGATGCCCAGTGA

Translation (393 aa):
MTVQPSPWFSDLRPMATCPVLQKETLFRTGVHAYRIPALLYLKKQKTLLAFAEKRASKTDEHAELIVLRR
GSYNEATNRVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEHHQLHTKVNVTRLCC
VSSTDHGRTWSPIQDLTETTIGSTHQEWATFAVGPGHCLQLRNPAGSLLVPAYAYRKLHPAQKPTPFAFC
FISLDHGHTWKLGNFVAENSLECQVAEVGTGAQRMVYLNARSFLGARVQAQSPNDGLDFQDNRVVSKLVE
PPHGCHGSVVAFHNPISKPHALDTWLLYTHPTDSRNRTNLGVYLNQMPLDPTAWSEPTLLAMGICAYSDL
QNMGQGPDGSPQFGCLYESGNYEEIIFLIFTLKQAFPTVFDAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH