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Report for CCDS48355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48355.1 Public Mus musculus 1 Srgap2 23 108 98 CCDS HistoryNCBI Gene:14270Re-query CCDS DB by CCDS ID:48355.1Re-query CCDS DB by GeneID:14270See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097588.8 ENSMUSP00000095195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097588.8Link to Ensembl Protein Viewer:ENSMUSP00000095195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097588Re-query CCDS DB by Protein ID:ENSMUSP00000095195
Original member Current member NCBI NM_001081011.2 NP_001074480.2 Accepted alive Link to Nucleotide Sequence:NM_001081011.2Link to Protein Sequence:NP_001074480.2Re-query CCDS DB by Nucleotide ID:NM_001081011Re-query CCDS DB by Protein ID:NP_001074480Link to BLAST:NP_001074480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074480.2 1071 Q91Z67 1071 100% 0 0

Chromosomal Locations for CCDS 48355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131289357 131289740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131292521 131292845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131296320 131296466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131298332 131298512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131300393 131300472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131310474 131310698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131317129 131317234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131319525 131319659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131320435 131320512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131325088 131325148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131332117 131332141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131333857 131333884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131336390 131336474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131344349 131344546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131345762 131345863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131349452 131349676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131355511 131355639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131356690 131356905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131364002 131364064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131411800 131411962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131436675 131436867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131524938 131525004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3216 nt):
ATGACGTCTCCAGCCAAATTCAAAAAGGATAAGGAGATCATCGCAGAGTACGATACTCAGGTCAAAGAGA
TT
AGGGCTCAGCTCACAGAGCAGATGAAATGCCTAGATCAGCAATGTGAGCTCCGGGTGCAGCTGTTGCA
G
GACCTGCAGGACTTCTTCCGCAAGAAGGCTGAGATTGAAATGGACTACTCTCGAAACCTGGAGAAGCTA
GCC
GAGCGCTTTCTAGCCAAGACACGAAGCACCAAGGACCAGCAATTTAAGAAGGACCAGAATGTTCTTT
CT
CCAGTCAACTGCTGGAACCTCCTCTTAAACCAAGTGAAGCGGGAGAGCAGGGATCATACCACCCTGAG
T
GACATCTACCTGAATAATATAATTCCTCGATTTGTTCAAGTCAGCGAGGACTCAGGAAGACTCTTTAAA
AAG
AGTAAAGAAGTTGGCCAGCAACTCCAAGATGATTTGATGAAAGTCCTGAACGAGCTTTACTCGGTCA
TG
AAGACATATCACATGTACAATGCCGACAGCATCAGTGCTCAGAGCAAACTGAAGGAAGCAGAGAAACA
A
GAAGAGAAGCAAATTGGCAAATCAGTAAAGCAAGAGGACCGGCAGACCCCTCGCTCCCCTGACTCCACA
GCC
AATGTCCGCATTGAGGAGAAGCATGTCCGGAGGAGCTCAGTGAAGAAGATTGAGAAGATGAAGGAGA
AG
CGACAAGCCAAGTACACAGAAAATAAGCTGAAGGCCATTAAAGCCCGGAATGAGTATTTATTGGCTTT
G
GAGGCAACCAATGCATCTGTCTTCAAGTACTATATCCATGACCTGTCTGATATTATTGATCAATGTTGT
GAC
CTAGGCTACCATGCTAGCCTGAACCGGGCTCTACGCACTTTCCTATCTGCTGAATTAAATCTGGAAC
AG
TCAAAACATGAAGGTCTGGATGCTATTGAAAATGCAGTAGAAAACCTAGATGCCACCAGTGACAAGCA
A
CGGCTCATGGAGATGTACAACAATGTTTTTTGCCCCCCTATGAAATTTGAATTCCAGCCCCACATGGGA
GAT
ATGGCCTCTCAACTCTGTGCCCAGCAGCCTGTCCAGAGTGAGCTGGTGCAGAGATGCCAACAGCTGC
AG
TCTCGCTTATCCACTTTGAAGATTGAGAATGAAGAGGTGAAAAAGACAATGGAGGCCACCCTGCAGAC
C
ATTCAAGACATTGTGACTGTTGAGGATTTTGATGTATCTGACTGCTTCCAGTATAGCAATTCCATGGAG
TCT
GTCAAATCAACTGTCTCTGAAACATTCATGAGCAAGCCCAGCATTGCTAAGAGGAGAGCGAACCAGC
AA
GAGACGGAACAGTTTTATTTCACGAAAATGAAGGAGTACTTGGAGGGTAGGAACCTCATCACAAAGCT
A
CAAGCCAAGCATGACCTCCTGCAGAAAACCCTGGGAGAAAGTCAGCGGACAGACTGTAGTCTTGCCAGG
CGA
AGCTCAACTGTGAGGAAACAGGATTCCAGCCAAGCAATTCCTCTGGTGGTAGAAAGCTGCATCCGGT
TT
ATTAGCAGACATGGCCTACAACATGAGGGAATTTTCCGGGTTTCTGGATCACAAGTAGAAGTGAACGA
C
ATAAAAAACGCCTTTGAGAGAGGAGAGGATCCCCTGGCTGGGGACCAGAATGACCATGACATGGACTCT
ATA
GCTGGTGTCCTCAAGCTTTACTTCCGGGGCCTGGAACACCCGCTCTTCCCTAAAGACATCTTCCATG
AC
TTGATTGCCTGTGTCACAATGGACAACCTGCAAGAGAGAGCTGTGCATATCCGGAAAGTCCTTCTGGT
C
CTGCCCAAGCCCACTCTGATTATCATGAGATATCTCTTTGCCTTCCTCAATCACTTATCACAGTTCAGT
GAA
GAGAACATGATGGACCCCTACAACCTTGCCATCTGCTTCGGGCCCTCACTGATGTCAGTGCCAGAGG
GC
CACGACCAGGTGTCCTGTCAAGCCCACGTGAATGAGCTGATCAAAACCATCATCATCCAACATGAGAA
C
ATTTTCCCAAACCCCAGGGAGCTGGAGGGTCCCATCTACAGCAGAGGAGGAAGCATGGAGGATTACTGT
GAC
AGCACTCATGGAGAGACTACCTCTGCTGAAGACTCCACCCAGGACGTTACAGCGGAGCACCACACAA
GC
GATGATGAATGTGAGCCCATAGAAGCCATTGCCAAGTTTGACTACGTAGGCCGGACAGCCCGAGAACT
G
TCTTTCAAGAAGGGAGCATCCCTGCTGCTCTACCAGCGAGCTTCTGATGACTGGTGGGAGGGCCGGCAC
AAC
GGTATAGATGGACTCATCCCCCATCAGTACATCGTAGTCCAAGACACCGAGGACGGTGTCGTGGAGA
GG
TCCAGCCCCAAGTCTGAGATTGAGGTCATGTCTGAGCCACCTGAAGAAAAGGTGACAGCCAGAACGGG
G
GCCAGCTGTCCCAGTGGGGGTCATGTAGCTGATATTTATCTTGCAAACATCAACAAGCAAAGGAAGCGT
CCA
GAATCTGGGAGCATCAGAAAAGCATTTCGGAGTGACAGCCATGGGCTGGGCAGTTCTCTGACTGACT
CC
TCCTCCCTGGGGGTGGGGGCTAGCTGCCGTCCATCCTCCCAGCCCATCATGAGCCAGAATCTCCCCAA
G
GAAGGGCCAGATAAGTGTTCCATCAGCGGCCATGGCAGCCTCAACTCTATCAGCCGCCACTCATCCTTG
AAG
AACCGGATGGACAGTCCGCAGATCCGGAAGACCGCTACGGCAGGAAGGTCAAAAAGTTTCAATAACC
AT
CGGCCCATGGACCCTGAAGTCATTGCACAGGATATTGAAGCAACAATGAACTCTGCCCTGAATGAGCT
T
CAAGAGCTAGAGCGGCAGAGCAGTGCTAAGCACACACCTGATGTGGTTCTGGACACCTTGGAACCACTC
AAG
ACCTCCCCGGTGGTAGCCCCCACATCTGAGCCCTCCAGCCCTCTGCACACCCAGCTCCTCAAGGACC
CT
GAGCCTGCCTTCCAGCGCAGCGCTAGTACTGCTGGGGACATTGCCTGCGCCTTCCGGCCTGTAAAGTC
T
GTCAAGATGGCTGCTCCAGTCAAACCACCAGCCACACGGCCCAAGCCAACTGTCTTCCCCAAAACAAAC
GCC
ACTAGCCCTGGTGTCAATTCATCTGCTTCCCCACAGGCCACTGACAAGTCTTGTACTGTCTAA


Translation (1071 aa):
MTSPAKFKKDKEIIAEYDTQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKL
A
ERFLAKTRSTKDQQF
KKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRLFK
K
SKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEKQEEKQIGKSVKQEDRQTPRSPDST
A
NVRIEEKHVRRSSVKKIEKMKEK
RQAKYTENKLKAIKARNEYLLALEATNASVFKYYIHDLSDIIDQCC
D
LGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENLDATSDKQRLMEMYNNVFCPPMKFEFQPHMG
D
M
ASQLCAQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTMEATLQTIQDIVTVEDFDVSDCFQYSNSME
S
VKSTVSETFMSKPSIAKRRANQQETEQFYFT
KMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLAR
R
SSTVRKQ
DSSQAIPLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDS
I
AGVLKLYFRGLEHPLFPKDIFHDLIACV
TMDNLQERAVHIRKVLLVLPKPTLIIMRYLFAFLNHLSQFS
E
ENMMDPYNLAICFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNPRELEGPIYSRGGSMEDY
C
D
STHGETTSAEDSTQDVTAEHHTSDD
ECEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH
N
GIDGLIPHQYIVVQD
TEDGVVERSSPKSEIEVMSEPPEEKVTARTGASCPSGGHVADIYLANINKQRKR
P
ESGSIRKAFRSDSHGLGSSLTDSSSLGVGASCRPSSQPIMSQNLPKEGPDKCSISGHGSLNSISRHSSL
K
NRMDSPQIRKTATAGRSKSFNNHRPMDPEVIAQ
DIEATMNSALNELQELERQSSAKHTPDVVLDTLEPL
K
TSPVVAPTSEPSSPLHTQLLKDPEPAFQRSASTAGDIACAFRPVKSVKMAAPVKPPATRPKPTVFPKTN
A
TSPGVNSSASPQATDKSCTV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser