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Report for CCDS48361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48361.1 Public Mus musculus 1 Plekha6 23 108 98 CCDS HistoryNCBI Gene:240753Re-query CCDS DB by CCDS ID:48361.1Re-query CCDS DB by GeneID:240753See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105082.8 ENSMUSP00000100703.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105082.8Link to Ensembl Protein Viewer:ENSMUSP00000100703.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105082Re-query CCDS DB by Protein ID:ENSMUSP00000100703
Original member Current member EBI ENSMUST00000186917.6 ENSMUSP00000139794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186917.6Link to Ensembl Protein Viewer:ENSMUSP00000139794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186917Re-query CCDS DB by Protein ID:ENSMUSP00000139794
Original member Current member NCBI NM_001160268.1 NP_001153740.1 Accepted alive Link to Nucleotide Sequence:NM_001160268.1Link to Protein Sequence:NP_001153740.1Re-query CCDS DB by Nucleotide ID:NM_001160268Re-query CCDS DB by Protein ID:NP_001153740Link to BLAST:NP_001153740.1

Chromosomal Locations for CCDS 48361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133260055 133260156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133263797 133263901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133264661 133264733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133266566 133266666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133270000 133270202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133272209 133272691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133273858 133274374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133280339 133280407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133281783 133281863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133282117 133282266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133283271 133283366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133284880 133284991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133285247 133285386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133287470 133287599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133287774 133287880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133292352 133292528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133293706 133293873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133293954 133294087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133294563 133294708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133298920 133299035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGTCCAACAAAACAGGTGGGAAACGTTCTGCTACCATCAACAGCGACATAGCCAACCACAACATGGTGT
CTGAGGTTCCTCCAGAGCGGCCCAACATCCGGGCGACTCGAACTTCCCGAAAAGCCATTGCCTTTGGTAA
ACGCGCACACTCCATGAAGCGGAACCCCAATGCACCTGTTACCAAGGCGGGCTGGCTCTATAAGCAGGCC
AGCTCCGGGGTGAAGCAGTGGAATAAGCGTTGGTTTGTCCTGGTGGATCGCTGCCTCTTTTACTACAAAG
ATGAGAAGCAGGAGAGCATCCTGGGCAGCATCCCCCTGCTGAGCTTCCGGGTGGCGGCTGTGCAGCCTTC
AGACAACATCAGTCGGAAGCACACGTTTAAGGTGACTGTTCACTGGGTAGATGAGGCTGGGGCCAGTTCT
ACGCACTGCCTCTCCCCACAGGCAGAGCACGCTGGAGTCCGCACCTACTTCTTCAGTGCCGAGAGCCCCG
AGGAGCAGGAGGCCTGGATCCAGGCCATGGGCGAGGCTGCTCGGGTCCAGATCCCTCCAGCCCAGAAGTC
AGTGCCTCAGCCTGTGCGTCACAGCCTCGAGAAGCCAGACTCAGAGAACATCCCACCCAGCAAACACCAT
CAGCAGCCACCTCACAACAATCTCACCAAGCTGGAGCCTGAGGCCAAGACTCGAGGGGAGGGCGACGGCA
GGGGCTGTGAGAAGGCCGAGCGCAGGCCTGAGAGGCCTGAAGTCAAGAAAGAGACTTTGGTAAAAGCCAA
TGGCCTCCCGTCTGGACCTGAGACAGCCTCAGAGCCTGGCAGCCCTTACCCCGATGGCCCGAGGGTTCCA
GGAGGTGGGGAACACCCTGCTCAGCCCAATGGCTGGCAGTATAGCTCCCCAAGCCGACCAGGGAGCACAG
CTTTTCCACCTCATGATGGGGACTCTGGGGGACAGCGGCGGAGCTTTCCACCACGTACTGACCCTGACAA
AATTGCCCAGCGCAAAAGCTCTATGAACCAGCTTCAGCAGTGGGTGAACCTGCGCCGAGGGGTGCCCCCA
CCCGAAGACCTTCGGAGCCCTTCAAGGTTCTACCCTATGCCCCGCCGGGTCCCTGACTATTACAATCCCT
ACTCCTCCCAGTATCCTGATGATTACCAGTACTACCCACCAGGGGTGCGGCCCGACAGCATCTGCTCCAT
GCCAGCCTACGATAGGATTAGTCCACCCTGGGCCCTGGAGGACAAGCGCCACTCCTTCCGGAATGGGGGT
GGACCCACTTACCAGCTTCATGAGTGGAAGGAGTCTACCAGCTACGGGCGGCAGGATGGCACCGTTTGGA
TCCCCAGCCCCTCCCGACAGCCAGTCTTTTATGACGAGCTGGATGCCGCCTCTGGCTCCTTGCGCCGCCT
GTCCTTGCAGCCCCGGTCCCACTCTGTGCCCCGCTCGCCCAGCCAGGGCTCCTACAGCCGTGCCCGCATC
TACTCCCCAGTGCGCTCACCTAGCGCCCGTTTTGATCGGCTGCCACCACGCAGTGAGGACATCTATGCAG
ATCCCGCTGCCTACGTGATGAGGCGATCTATCAGCTCCCCAAAGGTCCCTGCATACCCAGAGGTGTTCCG
GGATGGCCTCCACACCTTCAAGCTAAACGAGCAAGACACGGATAAGCTGCTGGGCAAGCTGTGTGAGCAG
AACAAGGTAGTAAGGGAACAGGAGCGGCTGGTGCAGCAGCTGCGGGCAGAGAAGGAGAGCCTAGAAAGTG
CCTTGATGGGAACCCACCAGGAGCTGGAGATGTTTGGGAGCCAGCCCGCCTACCCAGAGAAGCTGCTGCA
CAAGAAGGAGTCTCTGCAGAACCAACTTATCAACATCCGGGTGGAGCTGTCACAGGCGACCACGGCACTG
ACCAACAGTACAGTGGTGTATGAGAACCTCGAATCGGAGGTCTCTGCCCTGCATGACGAACTCTGGGAGC
AGCTCAACTTGGATATCCAGAATGAGGTGCTCAATCGGCAAATCCAAAAGGAGATCTGGAGGATCCAGGA
TGTGATGGAAGGGCTGAGGAAGAACAACCCCTCTCGGGGCACTGACACAGCCAAGCACAGAGGAGGACTT
GGACCGTCAGCCACCTACAGCTCCAACAGCCCAGCCAGCCCTCTCAGCTCTGCCAGCCTTACCAGTCCCC
TGAGCCCCTTTTCAATGGTGTCTGGCTCTCAGGGTTCTCCCACTAAGCCAGGGTCCAGTGAGCCCAAAAC
AGGCTATGAGACAAGCAAGAAAGACCCGAGCCAGACATCACCCCTGGGTACCCCTAGAGATATCAACCTG
GTACCCACCAGACAAGAGGTGGAGGCAGAGAAGCAGGCAGCTCTCAACAAAGTTGGCATTGTACCCCCTC
GGACCAAATCTCCTGCTGAGGAGGAGTTGACACCATCAGCAGTGGTGAGAAGGACCACGAATGGACTCAC
CAATGGCCTCTCCTCACGGCAAGAGCGCCCCAAGAGTGCTGTGTTCTCTGGAGAGGGCAAGGTGAAAATG
AGTGTCGAGGAGCAGATGGACCGGATGAGGCGGCATCAGAGCGGTTCCATGAAGGAAAAGCGGAGGAGCC
TACAGCTCCCAGCCAGCCCAGCCCCTGAGCCCAGCACCCGGCCTGCCTACAAAGTGGTGCGCCGTCACCG
CAGCATCCATGAAGTAGACATCTCCAACCTGGAGGCAGCCCTGAGAGCCGAGGAACCTGGTGGTCAGGCA
TATGAGACACCACGGGAGGAGATCGCGAGGCTCCGCAAGATGGAGCTGGAGCCTCAGCACTACGATGTGG
ACATCAGTAAGGAGCTCTCTACTCCAGACAAAGTCCTCATCCCTGAACGGTACATTGACCTGGAACCTGA
CACTCCCTTGAGCCCGGAGGAGTTGAAGGAGAAGCAGAAGAAGGTGGAGAGGATCAAGACGCTCATTGCC
AAATCCAGTATGCAGAACGTGGTGCCCATCGGCGAGGGGGACTCTGTGGACGTGCCCCAGGACTCAGAGA
GCCAGCTGCAGGAGCAGGAGAAGCGGATTGAAATCTCCTGTGCCCTGGCGACCGAGGCCTCCCGCAGGGG
CCGCATGCTGTCTGTGCAGTGTGCCACCCCCAGCCCTCCCACCTCCCCTGCTTCCCCGACTCCACCAGTC
AACCCCCTCTCGTCTGACCGCCCACGGGGCGCCGACAGCAGCCATACCATGCGGGTCTGA

Translation (1069 aa):
MSNKTGGKRSATINSDIANHNMVSEVPPERPNIRATRTSRKAIAFGKRAHSMKRNPNAPVTKAGWLYKQA
SSGVKQWNKRWFVLVDRCLFYYKDEKQESILGSIPLLSFRVAAVQPSDNISRKHTFKVTVHWVDEAGASS
THCLSPQAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQPVRHSLEKPDSENIPPSKHH
QQPPHNNLTKLEPEAKTRGEGDGRGCEKAERRPERPEVKKETLVKANGLPSGPETASEPGSPYPDGPRVP
GGGEHPAQPNGWQYSSPSRPGSTAFPPHDGDSGGQRRSFPPRTDPDKIAQRKSSMNQLQQWVNLRRGVPP
PEDLRSPSRFYPMPRRVPDYYNPYSSQYPDDYQYYPPGVRPDSICSMPAYDRISPPWALEDKRHSFRNGG
GPTYQLHEWKESTSYGRQDGTVWIPSPSRQPVFYDELDAASGSLRRLSLQPRSHSVPRSPSQGSYSRARI
YSPVRSPSARFDRLPPRSEDIYADPAAYVMRRSISSPKVPAYPEVFRDGLHTFKLNEQDTDKLLGKLCEQ
NKVVREQERLVQQLRAEKESLESALMGTHQELEMFGSQPAYPEKLLHKKESLQNQLINIRVELSQATTAL
TNSTVVYENLESEVSALHDELWEQLNLDIQNEVLNRQIQKEIWRIQDVMEGLRKNNPSRGTDTAKHRGGL
GPSATYSSNSPASPLSSASLTSPLSPFSMVSGSQGSPTKPGSSEPKTGYETSKKDPSQTSPLGTPRDINL
VPTRQEVEAEKQAALNKVGIVPPRTKSPAEEELTPSAVVRRTTNGLTNGLSSRQERPKSAVFSGEGKVKM
SVEEQMDRMRRHQSGSMKEKRRSLQLPASPAPEPSTRPAYKVVRRHRSIHEVDISNLEAALRAEEPGGQA
YETPREEIARLRKMELEPQHYDVDISKELSTPDKVLIPERYIDLEPDTPLSPEELKEKQKKVERIKTLIA
KSSMQNVVPIGEGDSVDVPQDSESQLQEQEKRIEISCALATEASRRGRMLSVQCATPSPPTSPASPTPPV
NPLSSDRPRGADSSHTMRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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