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Report for CCDS48431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48431.1 Public Mus musculus 1 Ildr2 23 108 98 CCDS HistoryNCBI Gene:100039795Re-query CCDS DB by CCDS ID:48431.1Re-query CCDS DB by GeneID:100039795See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111416.6 ENSMUSP00000107047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111416.6Link to Ensembl Protein Viewer:ENSMUSP00000107047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111416Re-query CCDS DB by Protein ID:ENSMUSP00000107047
Original member Current member NCBI NM_001164528.1 NP_001158000.1 Accepted alive Link to Nucleotide Sequence:NM_001164528.1Link to Protein Sequence:NP_001158000.1Re-query CCDS DB by Nucleotide ID:NM_001164528Re-query CCDS DB by Protein ID:NP_001158000Link to BLAST:NP_001158000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158000.1 661 B5TVM2-1 661 100% 0 0

Chromosomal Locations for CCDS 48431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166254376 166254466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166269305 166269637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166270499 166270618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166291416 166291472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166294591 166294737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166295752 166295928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166303502 166303615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166307720 166307933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166308847 166309543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166310760 166310795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGCCCGCTTTTCCCACTCTGGATCTGGATGGGAAGTTGGGGAAGATGGATAGGGTCGTGTTGGGGTGGA
CCGCTGTCTTCTGGTTAACAGCCATGGTTGAAGGCCTTCAGGTCACAGTGCCTGACAAGAAGAAGGTGGC
CATGCTCTTCCAGCCCACTGTGCTTCGATGCCACTTTTCCACGTCCTCCCATCAGCCTGCGGTGGTTCAG
TGGAAGTTCAAATCCTACTGCCAGGATCGCATGGGAGAATCCTTGGGCATGTCTTCTCCCCGAGCCCAAG
CGCTCAGCAAGAGGAACCTGGAATGGGACCCCTACTTGGATTGTTTAGACAGCAGAAGGACCGTCCGAGT
GGTAGCTTCCAAACAGGGCTCGACGGTTACCCTGGGAGATTTCTACAGGGGCAGAGAGATCACAATAGTT
CACGATGCAGATCTTCAAATTGGAAAGCTCATGTGGGGAGACAGCGGACTCTACTACTGTATCATCACCA
CCCCGGATGACCTGGAAGGCAAAAACGAAGACTCAGTGGAACTGCTGGTGTTGGGCAGGACAGGGCTGCT
TGCTGATCTCTTGCCCAGTTTTGCTGTGGAGATTATGCCAGAGTGGGTGTTTGTCGGCCTGGTGATCCTG
GGGATTTTCCTCTTCTTCGTGCTGGTGGGGATCTGCTGGTGCCAATGCTGCCCTCACAGTTGCTGCTGCT
ATGTCCGCTGCCCATGCTGCCCAGATTCCTGCTGCTGCCCTCAGGCCTTGTATGAAGCAGGGAAAGCAGC
CAAGGCCGGGTACCCTCCCTCTGTCTCCGGTGTCCCCGGCCCCTACTCCATCCCCTCTGTCCCTTTGGGA
GGAGCCCCCTCTTCTGGCATGCTGATGGACAAGCCGCATCCACCTCCCCTGGCACCAAGTGATTCCACTG
GAGGAAGCCACAGTGTTCGCAAAGGTTACCGGATCCAGGCTGACAAAGAGAGAGACTCCATGAAGGTCCT
GTACTATGTCGAGAAGGAGCTGGCTCAGTTTGATCCAGCCAGGAGGATGAGAGGCAGATATAACAACACC
ATCTCGGAACTCAGCTCCCTGCATGATGATGACAGCAATTTCCGCCAGTCTTACCACCAGATGCGGAATA
AGCAGTTCCCTATGTCTGGAGACCTGGAAAGCAATCCTGACTACTGGTCAGGTGTCATGGGAGGCAACAG
TGGGACCAACAGGGGGCCAGCCTTGGAGTATAACAAAGAGGACCGTGAGAGCTTCAGGCACAGCCAGCAG
CGCTCCAAATCTGAGATGCTGTCGCGGAAGAACTTTGCCACGGGCGTGCCGGCCGTGTCGATGGACGAGC
TGGCAGCCTTCGCAGACTCGTACGGCCAGCGGTCGCGGCGCGCCAATGGCAACAGCCACGAGGCGCGGGC
GGGGAGCCGCTTCGAGCGCTCGGAGTCGCGGGCCCACGGTGCCTTCTACCAGGACGGCTCGCTGGATGAG
TACTACGGGCGCGGACGCAGTCGCGAGCCGCCGGGAGACGGGGAGCGTGGCTGGACCTACAGCCCCGCAC
CCGCACGCCGCCGGCCGCCAGAGGATGCGCCTCTGCCGCGCCTGGTGAGCCGGACCCCGGGCACCGCGCC
CAAGTACGATCACTCGTACCTGAGCAGCGTGCTGGAGCGCCAGGCGCGGCCGGAGAGCAGCAGCCGCGGG
GGCAGCCTGGAGACGCCGTCCAAGCTGGGCGCGCAGCTGGGCCCGCGCAGCGCATCCTACTACGCCTGGT
CGCCGCCAACCACATACAAAGCTGGGGCCAGCGAGGGCGAAGACGAGGACGACGCGGCGGATGAGGACGC
GCTGCCACCCTACAGCGAGCTGGAGCTGAGCCGCGGAGAGCTGAGCCGGGGCCCGTCCTACCGTGGGCGT
GACCTGTCCTTCCACAGCAACTCGGAGAAGAGGAGGAAAAAGGAGCCCGCCAAGAAACCCGGCGACTTTC
CAACCAGGATGTCCCTTGTAGTCTGA

Translation (661 aa):
MPAFPTLDLDGKLGKMDRVVLGWTAVFWLTAMVEGLQVTVPDKKKVAMLFQPTVLRCHFSTSSHQPAVVQ
WKFKSYCQDRMGESLGMSSPRAQALSKRNLEWDPYLDCLDSRRTVRVVASKQGSTVTLGDFYRGREITIV
HDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDSVELLVLGRTGLLADLLPSFAVEIMPEWVFVGLVIL
GIFLFFVLVGICWCQCCPHSCCCYVRCPCCPDSCCCPQALYEAGKAAKAGYPPSVSGVPGPYSIPSVPLG
GAPSSGMLMDKPHPPPLAPSDSTGGSHSVRKGYRIQADKERDSMKVLYYVEKELAQFDPARRMRGRYNNT
ISELSSLHDDDSNFRQSYHQMRNKQFPMSGDLESNPDYWSGVMGGNSGTNRGPALEYNKEDRESFRHSQQ
RSKSEMLSRKNFATGVPAVSMDELAAFADSYGQRSRRANGNSHEARAGSRFERSESRAHGAFYQDGSLDE
YYGRGRSREPPGDGERGWTYSPAPARRRPPEDAPLPRLVSRTPGTAPKYDHSYLSSVLERQARPESSSRG
GSLETPSKLGAQLGPRSASYYAWSPPTTYKAGASEGEDEDDAADEDALPPYSELELSRGELSRGPSYRGR
DLSFHSNSEKRRKKEPAKKPGDFPTRMSLVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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