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Report for CCDS48603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48603.1 Public Mus musculus 10 Slc5a4b 23 108 98 CCDS HistoryNCBI Gene:64454Re-query CCDS DB by CCDS ID:48603.1Re-query CCDS DB by GeneID:64454See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120757.1 ENSMUSP00000113582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120757.1Link to Ensembl Protein Viewer:ENSMUSP00000113582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120757Re-query CCDS DB by Protein ID:ENSMUSP00000113582
Original member Current member NCBI NM_023219.2 NP_075708.2 Accepted alive Link to Nucleotide Sequence:NM_023219.2Link to Protein Sequence:NP_075708.2Re-query CCDS DB by Nucleotide ID:NM_023219Re-query CCDS DB by Protein ID:NP_075708Link to BLAST:NP_075708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075708.2 660 Q91ZP4 660 100% 0 0

Chromosomal Locations for CCDS 48603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76058688 76058899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76060349 76060454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76062214 76062429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76063954 76064122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76070504 76070654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76072428 76072535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76074980 76075115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76081316 76081536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76089906 76089986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76090679 76090784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76103824 76103928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76106707 76106766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76108498 76108602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76110018 76110089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76110802 76110936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGCTAGCACCTTAAGTCCCAGCATCACGCCTCAGACTGAGGAGCCTCCTGTAGTGCCAGTGCGCATTC
AGAATGCTGCTGACATCTCTGTCATCGTCATCTACTTCATAGTGGTGCTAGCTGTGGGGCTGTGGTCAAT
GGTGAGAAGCAACCGTGGCACTGTTGGAGGCTTCTTCCTGGCTGGTCATGACATGGCCTGGTGGCCGATG
GGTGCCTCTCTCTTTGCCAGTAACATTGGCAGCAATCACTTCGTGGGCTTGGCTGGAACAGGAGCGGCTT
CAGGAATCGCTATTGCAGCTGTGGAATGGAATGCCCTGCTTATGGTGCTGGTTCTTGGTTGGGTGTTTCT
CCCCATCTACATCAAGGCTGGGGTGTTGACCATGCCAGAGTATCTCAGGAAGCGCTTCGGTGGGAAGAGA
CTGCAGATCTACCTTTCTGTCCTCTCCCTCTTCATCATGGTGGCCCTTCAAACTTCCTCAATCATATTTT
CCGGAGCCATATTCATTCAATTGGCCTTGGGATTGAACCTCTACCTGGCTGTCTTCATCCTATTGGCTAT
CACTGCTTTTTACACGGTGGCTGGGGGTTTGGCCTCAGTGATCTACACAGACTCTGTGCAGACTTTCATC
ATGCTGCTTGGCTCCTTAATTCTCATGGGGTTTGCATTTGCTGAAGTCGGAGGCTACGAGAGCTTTACCG
AGAAGTATATGAATGCCATCCCCTCTGTAGTGGAGGGGGACAACCTGACCATCAGCCCCAAGTGCTACAC
TCCTCAGCCCGACTCCTTCCACGTCTTCCGAGATCCAGTCACTGGAGACATTCCATGGCCGGGACTGATA
TTTGGAATGACCATTTTAGCCATCTGGTACTGGTGTGCCGATCAGGTCATCGTACAGCGCTGCTTATGTG
GTAAGAACATGTCCCACGTGAAGGCCGCCTGCATCCTGTGTGGTTACCTGAAGCTGCTGCCCATGTTCCT
CATGGTGATGCCGGGCATGATCAGCCGCATTCTGTACACAGATAAGGTGGCCTGCGTTGTACCTTCTGAG
TGTGAGAAACAGTGTGGCACTGCGGTCGGCTGCACCAACTATGCCTACCCCACCCTGGTGCTGGAGTTGA
TGCCTGATGGACTGCGAGGCCTGATGCTGTCAGTCATGCTGGCTTCTCTCATGAGCTCTCTGACCTCCAT
CTTCAACAGCGCCAGCACCCTCTTCACCATCGACCTGTACACCAAGATAAGGAAGAAGGCATCAGAGAGA
GAGCTCATGATAGCCGGACGGATATTTGGCATGGTCCTAATCGCCGTCAGCATCCTGTGGGTCCCACTGG
TCCAGGTGTCACAGAATGGACAGCTCTTCCACTATATTGGCTCAGTTTCTAGCTACCTTGGGCCTCCCCT
TGGTGCAGTCTTCATGCTTGCTATCTTCTTCAAAAGGGTCAATGAGCAGGGAGCATTCTGGGGGCTAATG
GTCGGACTTGTGGTAGGCCTTATTCGCCTGATCGCTGAGTTTGTATACGGAACAGGCAGCTGCGTGGCTC
CCAGTAACTGTCCCAAGATTATCTGTGGAGTGCACTATATGTACTTTGCCATCATACTCTTCTTTGTGTC
CATAATAGTAATCCTGGGAGTCTCCTTCCTAACGGAGCCGATTCCTGATGTTCACCTGTACCGCCTATGC
TGGAGTCTTTGGAACAACACAGAGGAGCGGATAGACTTGGATGCAGAAGAATTGGAAACTCAAGAAGAAG
CTGGTGGTGCTCTTGAAGAAGATTCTGAGCAATCCCGTGGCTGTCTCAAGAGGGCATGCTGCTTATTGTG
TGGTTTGCAGAATACAGGGCCCAAGCTGACCAAAGAAGAGGAGGCAGCTCTGAGGCAGAAGTTCTCAGAC
ACATCTGAGAAGCCCTTGTGGAGAACCGTCATGAACATCAATGCCGTCCTCCTCCTGGGTGTGGCTGTCT
TTGTCCATGCCTATTTTGCCTGA

Translation (660 aa):
MASTLSPSITPQTEEPPVVPVRIQNAADISVIVIYFIVVLAVGLWSMVRSNRGTVGGFFLAGHDMAWWPM
GASLFASNIGSNHFVGLAGTGAASGIAIAAVEWNALLMVLVLGWVFLPIYIKAGVLTMPEYLRKRFGGKR
LQIYLSVLSLFIMVALQTSSIIFSGAIFIQLALGLNLYLAVFILLAITAFYTVAGGLASVIYTDSVQTFI
MLLGSLILMGFAFAEVGGYESFTEKYMNAIPSVVEGDNLTISPKCYTPQPDSFHVFRDPVTGDIPWPGLI
FGMTILAIWYWCADQVIVQRCLCGKNMSHVKAACILCGYLKLLPMFLMVMPGMISRILYTDKVACVVPSE
CEKQCGTAVGCTNYAYPTLVLELMPDGLRGLMLSVMLASLMSSLTSIFNSASTLFTIDLYTKIRKKASER
ELMIAGRIFGMVLIAVSILWVPLVQVSQNGQLFHYIGSVSSYLGPPLGAVFMLAIFFKRVNEQGAFWGLM
VGLVVGLIRLIAEFVYGTGSCVAPSNCPKIICGVHYMYFAIILFFVSIIVILGVSFLTEPIPDVHLYRLC
WSLWNNTEERIDLDAEELETQEEAGGALEEDSEQSRGCLKRACCLLCGLQNTGPKLTKEEEAALRQKFSD
TSEKPLWRTVMNINAVLLLGVAVFVHAYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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