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Report for CCDS48643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48643.1 Public Mus musculus 10 Pip5k1c 23 108 98 CCDS HistoryNCBI Gene:18717Re-query CCDS DB by CCDS ID:48643.1Re-query CCDS DB by GeneID:18717See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163075.7 ENSMUSP00000124155.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163075.7Link to Ensembl Protein Viewer:ENSMUSP00000124155.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163075Re-query CCDS DB by Protein ID:ENSMUSP00000124155
Original member NCBI NM_001146687.2 NP_001140159.1 Updated not alive Link to Nucleotide Sequence:NM_001146687.2Link to Protein Sequence:NP_001140159.1Re-query CCDS DB by Nucleotide ID:NM_001146687Re-query CCDS DB by Protein ID:NP_001140159
Current member NCBI NM_001146687.3 NP_001140159.1 Accepted alive Link to Nucleotide Sequence:NM_001146687.3Link to Protein Sequence:NP_001140159.1Re-query CCDS DB by Nucleotide ID:NM_001146687Re-query CCDS DB by Protein ID:NP_001140159Link to BLAST:NP_001140159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001140159.1 635 O70161-3 635 100% 0 0

Chromosomal Locations for CCDS 48643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81293059 81293152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81304684 81304715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81305186 81305278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81305699 81305829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81306308 81306425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81307484 81307636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81308948 81309247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81310679 81310884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81311643 81311726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81311974 81312022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81312502 81312586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81312908 81313069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81313363 81313501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81313620 81313652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81313995 81314093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81314992 81315118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81317766 81317768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGAGCTAGAGGTGCCGGACGAGGCGGAGAGCGCCGAAGCGGGGGCCGTGACGGCGGAAGCGGCCTGGT
CTGCGGAGAGTGGGGCGGCGGCAGGTATGACCCAGAAGAAGGCTGGCCTTGCAGAGGCCCCCTTGGTGAC
AGGGCAGCCAGGCCCTGGCCATGGGAAGAAGCTGGGCCACCGAGGCGTGGATGCGTCGGGAGAGACTACG
TATAAGAAGACCACCTCGTCCACCCTGAAGGGCGCCATCCAGCTGGGGATCGGGTACACGGTGGGCAACC
TGAGCTCTAAGCCGGAGCGGGACGTGCTCATGCAGGACTTCTACGTGGTGGAGAGCATCTTCTTCCCCAG
TGAAGGGAGCAACCTCACCCCTGCCCACCACTTCCAGGATTTCCGCTTCAAGACCTATGCACCTGTTGCC
TTCCGCTACTTCCGGGAGCTCTTTGGCATCCGTCCAGATGACTATTTGTACTCCCTGTGCAATGAGCCAC
TCATCGAGCTCTCCAACCCCGGGGCCAGCGGCTCTGTCTTCTACGTCACCAGCGACGACGAGTTCATCAT
CAAGACTGTCATGCACAAGGAGGCAGAGTTCCTGCAGAAGCTGCTGCCTGGCTACTACATGAATCTCAAC
CAGAACCCACGGACGCTGCTGCCCAAGTTCTATGGGCTGTACTGCGTGCAGTCTGGTGGCAAGAACATCC
GCGTGGTGGTCATGAACAATGTGCTGCCCCGTGTCGTCAAAATGCACCTTAAGTTCGACCTCAAGGGCTC
CACGTACAAGCGCAGGGCCAGCAAGAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGGACTTC
ATGCAGGACATGCCCGAGGGGCTGCTGCTGGACTCCGACACCTTTGGCGCCCTGGTCAAGACGCTGCAGC
GAGACTGCCTGGTGCTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTGGGCGTGCACAACATCGA
TCAGCAGGAGCGAGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCGGATGAGAAGCGGCCCGTGGCCCAG
AAGGCTCTGTATTCCACGGCCATGGAGTCTATCCAGGGCGGAGCTGCCCGTGGGGAGGCCATTGAGACAG
ATGACACGATGGGTGGGATTCCAGCAGTGAATGGGCGCGGGGAGCGACTGCTCCTCCACATCGGGATCAT
TGATATTCTGCAGTCCTACAGGTTCATCAAGAAGTTAGAACACACCTGGAAGGCCCTCGTCCATGATGGG
GACACTGTCTCAGTCCACCGGCCCAGCTTCTATGCAGAGCGCTTCTTCAAGTTCATGAGCAGCACGGTGT
TCCGGAAGAGTTCCTCCCTGAAGTCCTCTCCATCCAAGAAAGGACGTGGTGCCCTGCTGGCGGTCAAACC
CCTGGGGCCCACTGCTGCCTTCTCAGCCAGCCAGATCCCCAGCGAGAGAGAGGATGTGCAGTATGACCTG
CGGGGGGCCCGCAGCTACCCCACGCTTGAGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCGT
CCTTTGAGGAAGCCACCACAGCCTCCATCGCCACCACCCTGTCGTCCACCTCCCTCTCCATCCCAGAGCG
GTCCCCTTCAGATACATCGGAGCAGCCCCGGTACAGGCGGCGCACGCAGTCTTCAGGCCAGGATGGCCGG
CCCCAGGAGGAGCCCCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTGGAGCCAGTGTGCGGTGTGG
GGGTTGTCCCCAAGGAGGAGGGTGCAGGAGTGGAGGTCCCCCCATGTGGGGCATCGGCTGCAGCCTCTGT
GGAAATAGACGCTGCCAGCCAGGCCTCAGAGCCTGCCAGCCAGGCCTCAGATGAGGAGGATGCACCCTCT
ACAGACATCTATTTTTAA

Translation (635 aa):
MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAGLAEAPLVTGQPGPGHGKKLGHRGVDASGETT
YKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHFQDFRFKTYAPVA
FRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMHKEAEFLQKLLPGYYMNLN
QNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKGSTYKRRASKKEKEKSLPTYKDLDF
MQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLLLGVHNIDQQERERQAEGAQSKADEKRPVAQ
KALYSTAMESIQGGAARGEAIETDDTMGGIPAVNGRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDG
DTVSVHRPSFYAERFFKFMSSTVFRKSSSLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDL
RGARSYPTLEDEGRPDLLPCTPPSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGR
PQEEPHAEDLQKITVQVEPVCGVGVVPKEEGAGVEVPPCGASAAASVEIDAASQASEPASQASDEEDAPS
TDIYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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