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Report for CCDS48695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48695.1 Public Mus musculus 10 Lyz1 23 108 98 CCDS HistoryNCBI Gene:17110Re-query CCDS DB by CCDS ID:48695.1Re-query CCDS DB by GeneID:17110See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092162.6 ENSMUSP00000089800.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092162.6Link to Ensembl Protein Viewer:ENSMUSP00000089800.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092162Re-query CCDS DB by Protein ID:ENSMUSP00000089800
Original member Current member NCBI NM_013590.4 NP_038618.1 Accepted alive Link to Nucleotide Sequence:NM_013590.4Link to Protein Sequence:NP_038618.1Re-query CCDS DB by Nucleotide ID:NM_013590Re-query CCDS DB by Protein ID:NP_038618Link to BLAST:NP_038618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038618.1 148 P17897 148 100% 0 0

Chromosomal Locations for CCDS 48695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117288583 117288649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117289119 117289197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117291029 117291193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117292703 117292838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAAGGCTCTCCTGACTCTGGGACTCCTCCTGCTTTCTGTCACTGCCCAGGCCAAGGTCTACAATCGTT
GTGAGTTGGCCAGAATTCTGAAAAGGAATGGAATGGATGGCTACCGTGGTGTCAAGCTGGCTGACTGGGT
GTGTTTAGCTCAGCATGAGAGCAATTATAACACACGAGCTACAAACTACAACCGTGGAGACCGAAGCACC
GACTATGGGATATTTCAGATCAATAGCCGATACTGGTGTAATGATGGCAAAACCCCAAGATCTAAGAATG
CCTGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAGGGT
GGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATCTGTCC
CAGTATATTCGGAACTGCGGAGTCTGA

Translation (148 aa):
MKALLTLGLLLLSVTAQAKVYNRCELARILKRNGMDGYRGVKLADWVCLAQHESNYNTRATNYNRGDRST
DYGIFQINSRYWCNDGKTPRSKNACGINCSALLQDDITAAIQCAKRVVRDPQGIRAWVAWRTQCQNRDLS
QYIRNCGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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