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Report for CCDS48874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48874.1 Public Mus musculus 11 Tbx4 23 108 98 CCDS HistoryNCBI Gene:21387Re-query CCDS DB by CCDS ID:48874.1Re-query CCDS DB by GeneID:21387See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108045.2 ENSMUSP00000103680.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108045.2Link to Ensembl Protein Viewer:ENSMUSP00000103680.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108045Re-query CCDS DB by Protein ID:ENSMUSP00000103680
Original member Current member NCBI NM_172798.1 NP_766386.1 Accepted alive Link to Nucleotide Sequence:NM_172798.1Link to Protein Sequence:NP_766386.1Re-query CCDS DB by Nucleotide ID:NM_172798Re-query CCDS DB by Protein ID:NP_766386Link to BLAST:NP_766386.1

Chromosomal Locations for CCDS 48874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85898497 85898612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85899750 85899897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911107 85911259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911936 85912024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85912106 85912341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85914129 85914745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTTCCCCAGCTACAAGGTAAAAGTCACAGGCATGAACCCCAAGACCAAGTACATACTTCTCATCGACA
TCGTCCCCGCAGATGACCATCGCTACAAGTTCTGTGACAACAAATGGATGGTCGCAGGGAAGGCTGAGCC
GGCCATGCCAGGAAGACTTTATGTGCACCCGGATTCTCCTGCCACCGGGGCTCACTGGATGCGGCAGTTG
GTCTCTTTCCAGAAGCTGAAGCTGACAAACAACCACCTGGACCCCTTTGGCCATATCATCCTCAACTCCA
TGCATAAGTACCAGCCAAGGCTGCACATCGTTAAGGCCGACGAGAACAATGCTTTTGGCTCCAAAAACAC
AGCCTTTTGCACCCACGTGTTCCCAGAGACCTCCTTCATCTCTGTGACCTCCTACCAGAACCACAAGATC
ACCCAGCTGAAAATTGAGAACAACCCTTTTGCCAAGGGATTCCGGGGCAGCGATGACAGTGACCTGCGTG
TGGCCCGGTTGCAGAGCAAGGAGTATCCCGTGATCTCCAAAAGCATCATGAGGCAGAGGCTCGTTTCCAG
CCAACTCTCGGCTAAGCCAGATGTCAGCCCCCTGCACAGCGCACACCAGGCCCTGCAGCACTACCAGTAT
GAGAATGGGGCCCACATGCAGTTTGCTGCTGCAGAGCCCCAGGACCTGCCCCTCAACACCTTCCCAACTC
AGAGGGACTCCAGCCTCTTCTACCACTGCCTGAAGCGTAGAGACAGTGCCCGCCACCTGGACTTGCCCTG
CAAGCGATCCTACCTGGAAACCCCCTCTTCAGTGGGGGACGATCACTATTTCCGTTCTCCCCCTCCCTAC
GACCAGCAGATGCTGAGCCCTTCTTATTGCAGTGAGGTGACCCCCAGAGAAGCCTGTATGTACTCGAGTT
CGGGGCCTGAGATCGCAGGGGTGTCAGCCGTGGACGACCTGCCCCCACCCCCACTGAGCTGTAACATGTG
GACGTCGGTGTCGCCATACACCAGCTACAGCGTTCAGACCATGGAGACTGTGCCTTACCAGCCCTTCCCC
GCACACTTTACTGCCACCACAGTGATGCCTCGGCTGCCCACCATCGCCGCCCAGAGCGCCCAGCCACCAG
GAAATGCCCACTTTAGTGTGTACAATCAGCTATCCCAGTCTCAGGTCCGAGAGCGGGGGCCCTCTGCTTC
CTTCCCTAGAGAGCGTGGCCTCCCTGGGATGTGTGAGAGGAAGCCACCCTCACCTCACCTGAACACTGCC
AACGAGTTCCTCTACTCACAGAGCTTCTCCTTGACCCGGGAGTCATCCTTACAGTATCATTCAGGGATGG
GGACTGTGGAGAACTGGACCGATGGATGA

Translation (452 aa):
MFPSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQL
VSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCTHVFPETSFISVTSYQNHKI
TQLKIENNPFAKGFRGSDDSDLRVARLQSKEYPVISKSIMRQRLVSSQLSAKPDVSPLHSAHQALQHYQY
ENGAHMQFAAAEPQDLPLNTFPTQRDSSLFYHCLKRRDSARHLDLPCKRSYLETPSSVGDDHYFRSPPPY
DQQMLSPSYCSEVTPREACMYSSSGPEIAGVSAVDDLPPPPLSCNMWTSVSPYTSYSVQTMETVPYQPFP
AHFTATTVMPRLPTIAAQSAQPPGNAHFSVYNQLSQSQVRERGPSASFPRERGLPGMCERKPPSPHLNTA
NEFLYSQSFSLTRESSLQYHSGMGTVENWTDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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