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Report for CCDS49139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49139.1 Public Mus musculus 12 Zc3h14 23 108 98 CCDS HistoryNCBI Gene:75553Re-query CCDS DB by CCDS ID:49139.1Re-query CCDS DB by GeneID:75553See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021399.8 ENSMUSP00000021399.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021399.8Link to Ensembl Protein Viewer:ENSMUSP00000021399.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021399Re-query CCDS DB by Protein ID:ENSMUSP00000021399
Original member Current member NCBI NM_001160108.1 NP_001153580.1 Accepted alive Link to Nucleotide Sequence:NM_001160108.1Link to Protein Sequence:NP_001153580.1Re-query CCDS DB by Nucleotide ID:NM_001160108Re-query CCDS DB by Protein ID:NP_001153580Link to BLAST:NP_001153580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153580.1 309 Q8BJ05-4 309 100% 0 0

Chromosomal Locations for CCDS 49139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98771256 98771649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98774245 98774319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98783582 98783702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98784916 98785052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98785318 98785406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98785635 98785741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98786575 98786581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAAATGTCTTCAAGGTTTTCATCACCATCTCTACCAGTTTTCCTCTCACCAGAGCCAGCTGACTTAG
GCTCTCTGACAAGTGCTTCTTGTTCACTAAATGAGCTGGGCAATATTTCCTACCTTTTGAGGAAAATAGC
AACTGATATCAATGAAATGAAAGGAATGAAAGCAGCTATTTTGACAGTGGAAGCAAATCTTTTTGATTTG
AATGTTAGAGTGTCCCAGAACGAAGCAAAAATTTCATCTTTAGAGGTTAAAATGAATGAATATTTAACAT
CAACATCTGAATGCAACAGACAGTTGGAAGATTTTCAAGAGAGACTAGAATTTGAGTCACAGTCAGAGAC
TACTGATGCAAACCTAATTGGCTTCCTAACAGAGGTTGAGAAAGGAACTCAACAGAGGCAATTGTTATCC
CGACTGCAAATTGATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAGCCGAGATGACTGACCTGAGTG
TGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCTGTAAAAATGGGGATGAGTG
TGTATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGTTT
GTGCATCCAAATTGTAAATATGACACAAAGTGTACTAAAGCAGATTGTCCCTTCACTCACATGAGTAGAA
GAGCCTCGATACTGACTCCAAAACCAGTGTCGTCACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTA
CTTCCCTGCTTGTAAGAAAATGGAATGTCCCTTCTACCACCCAAAACACTGTAGGTTTAACACTCAGTGT
ACGAGACCTGACTGCACATTTTATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTC
GACCTCAGAGCAGTGAGTGA

Translation (309 aa):
MKMSSRFSSPSLPVFLSPEPADLGSLTSASCSLNELGNISYLLRKIATDINEMKGMKAAILTVEANLFDL
NVRVSQNEAKISSLEVKMNEYLTSTSECNRQLEDFQERLEFESQSETTDANLIGFLTEVEKGTQQRQLLS
RLQIDPVMVETMEMSQAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLF
VHPNCKYDTKCTKADCPFTHMSRRASILTPKPVSSPAPSSNGQLCRYFPACKKMECPFYHPKHCRFNTQC
TRPDCTFYHPTITVPPRHALKWIRPQSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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